miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8508 5' -48.1 NC_002169.1 + 1050 0.71 0.963303
Target:  5'- cGGUGCcgcugcucgUCGACGACGGuuCGACGGCg -3'
miRNA:   3'- uUCAUGcaa------AGUUGCUGCU--GCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 1263 0.7 0.979735
Target:  5'- cAGGUGC-UUUauccacuugaauaGACGACGACGACGAa -3'
miRNA:   3'- -UUCAUGcAAAg------------UUGCUGCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 1337 0.78 0.744337
Target:  5'- ---gGCGg--CGGCGGCGGCGGCGGCg -3'
miRNA:   3'- uucaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 1552 0.69 0.992173
Target:  5'- uGGUgGCGguggCGGCGGUGGCGGCGGCg -3'
miRNA:   3'- uUCA-UGCaaa-GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 1671 0.74 0.887716
Target:  5'- ----cUGUUUCGACGACGucggugGCGACGGCg -3'
miRNA:   3'- uucauGCAAAGUUGCUGC------UGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 2144 0.74 0.915238
Target:  5'- gGGGUACGcgUCGACGACGccgcaauacccacguCGAUGACa -3'
miRNA:   3'- -UUCAUGCaaAGUUGCUGCu--------------GCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 2216 0.72 0.955652
Target:  5'- ----cCGUgucugUCAucaugaugACGACGACGACGACg -3'
miRNA:   3'- uucauGCAa----AGU--------UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 3392 0.75 0.85677
Target:  5'- aGAGUAUaucgGUgacaaugaCAAUGACGACGACGACg -3'
miRNA:   3'- -UUCAUG----CAaa------GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 3520 0.78 0.723554
Target:  5'- ---gACGaggaCGACGACGACGACGACa -3'
miRNA:   3'- uucaUGCaaa-GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 3711 0.75 0.864866
Target:  5'- ---gACGUU--GACGACGACGACGAa -3'
miRNA:   3'- uucaUGCAAagUUGCUGCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 4054 0.78 0.722505
Target:  5'- cGGUucUGUUUCGacucgucuucccgACGACGACGACGACg -3'
miRNA:   3'- uUCAu-GCAAAGU-------------UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 4430 0.7 0.980651
Target:  5'- ---------nCGGCGGCGACGGCGACa -3'
miRNA:   3'- uucaugcaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 4453 0.79 0.681017
Target:  5'- uAGUAaaga-CGACGACGACGACGACg -3'
miRNA:   3'- uUCAUgcaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 4576 0.7 0.9783
Target:  5'- ----------uGACGACGACGACGACa -3'
miRNA:   3'- uucaugcaaagUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 4688 0.75 0.872727
Target:  5'- ---------aCGACGACGACGACGACg -3'
miRNA:   3'- uucaugcaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 6397 0.79 0.670242
Target:  5'- gAGGUucaGgcUCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UUCAug-CaaAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 6674 0.75 0.872727
Target:  5'- ---------aCGACGACGACGACGACa -3'
miRNA:   3'- uucaugcaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 6862 0.66 0.999474
Target:  5'- ---gACGccgCAGCcaauGCGACGACGACa -3'
miRNA:   3'- uucaUGCaaaGUUGc---UGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 9079 0.77 0.764677
Target:  5'- -----aGUcaCAACGACGACGACGACa -3'
miRNA:   3'- uucaugCAaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 9312 0.68 0.996379
Target:  5'- aAGGUGaacacCAaucGCGACGACGACGAUu -3'
miRNA:   3'- -UUCAUgcaaaGU---UGCUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.