miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8508 5' -48.1 NC_002169.1 + 55320 0.76 0.839899
Target:  5'- --aUugGUUuggCggUGACGACGACGACa -3'
miRNA:   3'- uucAugCAAa--GuuGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 54943 0.8 0.6486
Target:  5'- uGAGU--GUcaCAACGACGACGACGACa -3'
miRNA:   3'- -UUCAugCAaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 33116 0.79 0.702419
Target:  5'- ---gACGa--CGACGACGACGACGACg -3'
miRNA:   3'- uucaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 1337 0.78 0.744337
Target:  5'- ---gGCGg--CGGCGGCGGCGGCGGCg -3'
miRNA:   3'- uucaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 75519 0.78 0.744337
Target:  5'- ---aACGguggaGACGACGACGACGACg -3'
miRNA:   3'- uucaUGCaaag-UUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 9079 0.77 0.764677
Target:  5'- -----aGUcaCAACGACGACGACGACa -3'
miRNA:   3'- uucaugCAaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 29808 0.77 0.784488
Target:  5'- -uGU-CGUUaCAagaACGACGACGACGACg -3'
miRNA:   3'- uuCAuGCAAaGU---UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 33175 0.77 0.784488
Target:  5'- --aUACGa--CGACGACGACGACGAUa -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 56648 0.76 0.822179
Target:  5'- ---cACGU---AACGACGGCGACGACa -3'
miRNA:   3'- uucaUGCAaagUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 24709 0.8 0.637751
Target:  5'- ---aACGaaUUAACGACGACGACGACg -3'
miRNA:   3'- uucaUGCaaAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 135213 0.8 0.605213
Target:  5'- ---aACGg--CGACGACGGCGGCGACa -3'
miRNA:   3'- uucaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 65282 0.81 0.594401
Target:  5'- --aUACGa--CGACGACGACGACGACg -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 108732 0.84 0.439926
Target:  5'- cGGcgGCGg--CGACGACGACGACGACa -3'
miRNA:   3'- uUCa-UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 127944 0.81 0.551541
Target:  5'- cGAGgcgGCGg--CGGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UUCa--UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 117571 0.81 0.551541
Target:  5'- cAAGaagGCGg--CGGCGACGACGACGACc -3'
miRNA:   3'- -UUCa--UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 49144 0.81 0.562181
Target:  5'- --aUACGcgaCGACGACGACGACGACg -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 123876 0.81 0.562181
Target:  5'- aAAGUAaaacUUAACGACGACGACGACg -3'
miRNA:   3'- -UUCAUgcaaAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 124928 0.81 0.562181
Target:  5'- gGGGgcgGCGg--CGGCGGCGGCGGCGACa -3'
miRNA:   3'- -UUCa--UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 78747 0.81 0.572877
Target:  5'- cGAG-ACGa--CGACGACGACGACGACg -3'
miRNA:   3'- -UUCaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 61409 0.81 0.583619
Target:  5'- cGG-ACGaUUUCGagGCGACGACGACGACg -3'
miRNA:   3'- uUCaUGC-AAAGU--UGCUGCUGCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.