miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8508 5' -48.1 NC_002169.1 + 86921 1.09 0.015723
Target:  5'- aAAGUACGUUUCAACGACGACGACGACg -3'
miRNA:   3'- -UUCAUGCAAAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 12405 0.89 0.229994
Target:  5'- aGGGUAUcaUUUCAACGACGACGACGACg -3'
miRNA:   3'- -UUCAUGc-AAAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 99638 0.85 0.367334
Target:  5'- -uGUACGccaugaucUCGACGACGACGACGACg -3'
miRNA:   3'- uuCAUGCaa------AGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 108732 0.84 0.439926
Target:  5'- cGGcgGCGg--CGACGACGACGACGACa -3'
miRNA:   3'- uUCa-UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 117571 0.81 0.551541
Target:  5'- cAAGaagGCGg--CGGCGACGACGACGACc -3'
miRNA:   3'- -UUCa--UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 127944 0.81 0.551541
Target:  5'- cGAGgcgGCGg--CGGCGGCGGCGGCGGCg -3'
miRNA:   3'- -UUCa--UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 12059 0.81 0.551541
Target:  5'- uGAGgACGa--CGACGACGACGACGACg -3'
miRNA:   3'- -UUCaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 49144 0.81 0.562181
Target:  5'- --aUACGcgaCGACGACGACGACGACg -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 124928 0.81 0.562181
Target:  5'- gGGGgcgGCGg--CGGCGGCGGCGGCGACa -3'
miRNA:   3'- -UUCa--UGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 123876 0.81 0.562181
Target:  5'- aAAGUAaaacUUAACGACGACGACGACg -3'
miRNA:   3'- -UUCAUgcaaAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 78747 0.81 0.572877
Target:  5'- cGAG-ACGa--CGACGACGACGACGACg -3'
miRNA:   3'- -UUCaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 61409 0.81 0.583619
Target:  5'- cGG-ACGaUUUCGagGCGACGACGACGACg -3'
miRNA:   3'- uUCaUGC-AAAGU--UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 65282 0.81 0.594401
Target:  5'- --aUACGa--CGACGACGACGACGACg -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 118818 0.81 0.594401
Target:  5'- --aUACGa--CGACGACGACGACGACg -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 135213 0.8 0.605213
Target:  5'- ---aACGg--CGACGACGGCGGCGACa -3'
miRNA:   3'- uucaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 25675 0.8 0.616049
Target:  5'- ---aACGguaaCGACGACGACGACGACa -3'
miRNA:   3'- uucaUGCaaa-GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 24709 0.8 0.637751
Target:  5'- ---aACGaaUUAACGACGACGACGACg -3'
miRNA:   3'- uucaUGCaaAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 63028 0.8 0.637751
Target:  5'- --uUGCGUUUagcguuauACGACGACGACGACg -3'
miRNA:   3'- uucAUGCAAAgu------UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 54943 0.8 0.6486
Target:  5'- uGAGU--GUcaCAACGACGACGACGACa -3'
miRNA:   3'- -UUCAugCAaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 90328 0.79 0.657268
Target:  5'- cGAGUAaagcaaacguuguUGUUUCcaucucaGACGACGACGACGACg -3'
miRNA:   3'- -UUCAU-------------GCAAAG-------UUGCUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.