miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 3' -44.1 NC_002169.1 + 10711 0.75 0.970261
Target:  5'- ---aGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105037 0.75 0.966858
Target:  5'- -aUUGCAuCAgccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGCGU-GUa-------CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52666 0.75 0.963189
Target:  5'- ---aGUACAcGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUaCUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10517 0.76 0.955022
Target:  5'- --aCcCACAacGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaGcGUGUa-CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105401 0.76 0.945707
Target:  5'- --aCGCaacuuuaauACAcGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- aaaGCG---------UGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52974 0.76 0.940607
Target:  5'- ---aGUACAccAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11572 0.78 0.903681
Target:  5'- ---aGUACucGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52902 0.78 0.888983
Target:  5'- ---aGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- aaagCGUGUAcUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 120236 0.78 0.881203
Target:  5'- -aUUGUaauACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAGCG---UGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119514 0.8 0.838249
Target:  5'- ---aGUACAcGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11173 0.81 0.779037
Target:  5'- --aUGCAC--GAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaGCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 42190 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105502 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11444 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119422 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 120041 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52782 0.82 0.725012
Target:  5'- -aUCgGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAG-CGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 41868 0.82 0.713851
Target:  5'- aUUUCaUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11361 0.83 0.668453
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagcGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105396 0.84 0.645479
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.