Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8512 | 3' | -44.1 | NC_002169.1 | + | 41768 | 0.72 | 0.994911 |
Target: 5'- -cUC-CAUAcucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAGcGUGUa--CUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 41868 | 0.82 | 0.713851 |
Target: 5'- aUUUCaUACAcGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAGcGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 41996 | 0.86 | 0.542688 |
Target: 5'- gUUCaGUACAcGAUCUUUGCUUUCAUCu -3' miRNA: 3'- aAAG-CGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42061 | 0.75 | 0.970261 |
Target: 5'- ---aGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42190 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42190 | 0.82 | 0.747018 |
Target: 5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42259 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42385 | 0.69 | 0.999721 |
Target: 5'- uUUUCcaaaCACA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAGc---GUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42451 | 0.67 | 0.999949 |
Target: 5'- -gUCaaaCACA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAGc--GUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52666 | 0.75 | 0.963189 |
Target: 5'- ---aGUACAcGAUgUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUaCUAgAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52782 | 0.82 | 0.725012 |
Target: 5'- -aUCgGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAG-CGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52855 | 0.91 | 0.30074 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52902 | 0.78 | 0.888983 |
Target: 5'- ---aGUACAUcAUCUUUGCUUUCAUCc -3' miRNA: 3'- aaagCGUGUAcUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52974 | 0.76 | 0.940607 |
Target: 5'- ---aGUACAccAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53044 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53096 | 0.7 | 0.999087 |
Target: 5'- uUUUCaUACucaAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAGcGUGuacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53120 | 0.96 | 0.174098 |
Target: 5'- aUUCaGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aAAG-CGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53239 | 0.85 | 0.599462 |
Target: 5'- aUUUCaaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAGc-GUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53318 | 0.94 | 0.223939 |
Target: 5'- aUUCaGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAAG-CGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 71633 | 0.87 | 0.466574 |
Target: 5'- aUUUCaGUACAcGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAG-CGUGUaCUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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