miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 3' -44.1 NC_002169.1 + 10324 0.73 0.98743
Target:  5'- -aUCGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaAGCGUGUACU--------AGAAACGaaAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10517 0.76 0.955022
Target:  5'- --aCcCACAacGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaGcGUGUa-CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10711 0.75 0.970261
Target:  5'- ---aGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10819 0.74 0.976303
Target:  5'- ---aGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUaCUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10900 0.93 0.236547
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10935 0.84 0.633966
Target:  5'- cUUUgGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAgCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11008 0.94 0.211907
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11038 0.75 0.970261
Target:  5'- ---aGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11127 0.85 0.565229
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagcGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11173 0.81 0.779037
Target:  5'- --aUGCAC--GAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaGCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11228 0.93 0.236547
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11288 0.7 0.999087
Target:  5'- ----aCACA--AUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagcGUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11361 0.83 0.668453
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagcGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11444 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11475 0.84 0.645479
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11572 0.78 0.903681
Target:  5'- ---aGUACucGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11634 0.85 0.576594
Target:  5'- ---aGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11761 0.73 0.985615
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 12270 0.7 0.999269
Target:  5'- gUUCGCACAUGuUCUguaucGCUUgCAUUa -3'
miRNA:   3'- aAAGCGUGUACuAGAaa---CGAAaGUAG- -5'
8512 3' -44.1 NC_002169.1 + 36102 0.66 0.999995
Target:  5'- --gCGCACAcuGUCUUUGCag-UAUCg -3'
miRNA:   3'- aaaGCGUGUacUAGAAACGaaaGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.