miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 3' -44.1 NC_002169.1 + 120236 0.78 0.881203
Target:  5'- -aUUGUaauACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAGCG---UGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 120041 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119796 0.84 0.633967
Target:  5'- cUUUgGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAgCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119612 0.94 0.211907
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119598 0.86 0.520451
Target:  5'- uUUUCaGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAG-CGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119514 0.8 0.838249
Target:  5'- ---aGUACAcGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119422 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119318 0.73 0.98743
Target:  5'- aUUUUuCAUAgacGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGcGUGUa--CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105696 0.68 0.999836
Target:  5'- -aUUGUaauACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAGCG---UGUaCUAGAAACGAAAGuAG- -5'
8512 3' -44.1 NC_002169.1 + 105605 0.72 0.995698
Target:  5'- uUUUCauaCACA--AUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAGc--GUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105516 0.69 0.999542
Target:  5'- -gUCgGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaAG-CGUGUAcUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105502 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105401 0.76 0.945707
Target:  5'- --aCGCaacuuuaauACAcGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- aaaGCG---------UGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105396 0.84 0.645479
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105285 0.87 0.49858
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAg -5'
8512 3' -44.1 NC_002169.1 + 105207 0.67 0.999962
Target:  5'- ----aUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- aaagcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105151 1.1 0.027093
Target:  5'- uUUUCGCACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105095 0.85 0.599462
Target:  5'- ---aGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105037 0.75 0.966858
Target:  5'- -aUUGCAuCAgccuacucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGCGU-GUa-------CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 104964 0.68 0.999875
Target:  5'- -aUCGUuuCAUagucaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGCGu-GUAc----UAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.