miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 3' -44.1 NC_002169.1 + 11572 0.78 0.903681
Target:  5'- ---aGUACucGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 41868 0.82 0.713851
Target:  5'- aUUUCaUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52782 0.82 0.725012
Target:  5'- -aUCgGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAG-CGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11444 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105502 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119422 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 120041 0.82 0.747018
Target:  5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11173 0.81 0.779037
Target:  5'- --aUGCAC--GAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaGCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 52902 0.78 0.888983
Target:  5'- ---aGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- aaagCGUGUAcUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10935 0.84 0.633966
Target:  5'- cUUUgGUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAgCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105095 0.85 0.599462
Target:  5'- ---aGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 41996 0.86 0.542688
Target:  5'- gUUCaGUACAcGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- aAAG-CGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 42190 0.94 0.211907
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 42259 0.94 0.211907
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 53044 0.94 0.211907
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 104837 0.94 0.211907
Target:  5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagCGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 104953 0.93 0.236547
Target:  5'- cUUCaGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAAG-CGUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 71633 0.87 0.466574
Target:  5'- aUUUCaGUACAcGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAG-CGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 104763 0.87 0.49858
Target:  5'- aUUUCaaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- -AAAGc-GUGUACUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119598 0.86 0.520451
Target:  5'- uUUUCaGUACAcGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAG-CGUGUaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.