Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8512 | 3' | -44.1 | NC_002169.1 | + | 42451 | 0.67 | 0.999949 |
Target: 5'- -gUCaaaCACA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAGc--GUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 11475 | 0.84 | 0.645479 |
Target: 5'- ---aGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53239 | 0.85 | 0.599462 |
Target: 5'- aUUUCaaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAGc-GUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105151 | 1.1 | 0.027093 |
Target: 5'- uUUUCGCACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAGCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105516 | 0.69 | 0.999542 |
Target: 5'- -gUCgGUACAUcAUgUUUGCUUUCAUCc -3' miRNA: 3'- aaAG-CGUGUAcUAgAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 12270 | 0.7 | 0.999269 |
Target: 5'- gUUCGCACAUGuUCUguaucGCUUgCAUUa -3' miRNA: 3'- aAAGCGUGUACuAGAaa---CGAAaGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105605 | 0.72 | 0.995698 |
Target: 5'- uUUUCauaCACA--AUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAGc--GUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 11761 | 0.73 | 0.985615 |
Target: 5'- ----aUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagcGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52974 | 0.76 | 0.940607 |
Target: 5'- ---aGUACAccAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105396 | 0.84 | 0.645479 |
Target: 5'- ---aGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 119514 | 0.8 | 0.838249 |
Target: 5'- ---aGUACAcGAUCUUUGCUUUUAUCg -3' miRNA: 3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105037 | 0.75 | 0.966858 |
Target: 5'- -aUUGCAuCAgccuacucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAGCGU-GUa-------CUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 104964 | 0.68 | 0.999875 |
Target: 5'- -aUCGUuuCAUagucaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAGCGu-GUAc----UAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42190 | 0.82 | 0.747018 |
Target: 5'- ---aGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105696 | 0.68 | 0.999836 |
Target: 5'- -aUUGUaauACAcGAUCUUUGCUUUC-UCg -3' miRNA: 3'- aaAGCG---UGUaCUAGAAACGAAAGuAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42061 | 0.75 | 0.970261 |
Target: 5'- ---aGUACucGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 11361 | 0.83 | 0.668453 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagcGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 119796 | 0.84 | 0.633967 |
Target: 5'- cUUUgGUACAcGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAgCGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42385 | 0.69 | 0.999721 |
Target: 5'- uUUUCcaaaCACA--AUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAGc---GUGUacUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53096 | 0.7 | 0.999087 |
Target: 5'- uUUUCaUACucaAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAGcGUGuacUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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