Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8512 | 3' | -44.1 | NC_002169.1 | + | 105151 | 1.1 | 0.027093 |
Target: 5'- uUUUCGCACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAGCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53120 | 0.96 | 0.174098 |
Target: 5'- aUUCaGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aAAG-CGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42259 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 119612 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 11008 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 42190 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53044 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 104837 | 0.94 | 0.211907 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 53318 | 0.94 | 0.223939 |
Target: 5'- aUUCaGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAAG-CGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 10900 | 0.93 | 0.236547 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 104953 | 0.93 | 0.236547 |
Target: 5'- cUUCaGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAAG-CGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 11228 | 0.93 | 0.236547 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 71827 | 0.91 | 0.30074 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 52855 | 0.91 | 0.30074 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 71633 | 0.87 | 0.466574 |
Target: 5'- aUUUCaGUACAcGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAG-CGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 105285 | 0.87 | 0.49858 |
Target: 5'- ---aGUACAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- aaagCGUGUACUAGAAACGAAAGUAg -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 104763 | 0.87 | 0.49858 |
Target: 5'- aUUUCaaUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- -AAAGc-GUGUACUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 119598 | 0.86 | 0.520451 |
Target: 5'- uUUUCaGUACAcGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAG-CGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 41996 | 0.86 | 0.542688 |
Target: 5'- gUUCaGUACAcGAUCUUUGCUUUCAUCu -3' miRNA: 3'- aAAG-CGUGUaCUAGAAACGAAAGUAG- -5' |
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8512 | 3' | -44.1 | NC_002169.1 | + | 11127 | 0.85 | 0.565229 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaagcGUGUACUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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