miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 42186 0.9 0.427818
Target:  5'- uUgUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAgAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 42192 0.86 0.633757
Target:  5'- --aUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 42255 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52662 0.74 0.991008
Target:  5'- uUUUAGUACAcGAUgUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUaCUAgAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52782 0.83 0.777146
Target:  5'- aUC-GGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 52859 1.06 0.065958
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 52898 0.79 0.908077
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUAcUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52978 0.75 0.982345
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUacUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 53040 1 0.14547
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 53121 0.94 0.281151
Target:  5'- uUC-AGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53233 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53317 0.94 0.281151
Target:  5'- uUC-AGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 71635 0.78 0.943481
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 71831 1.06 0.065958
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104769 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104833 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 104952 0.94 0.266783
Target:  5'- gCUUcAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104959 0.66 0.999999
Target:  5'- uUCaUAGU-CA--AUCUUUGCUUUCGUc -3'
miRNA:   3'- gAG-AUCAuGUacUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105032 0.66 0.999999
Target:  5'- aUC-AGccUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUC--AUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105091 0.84 0.734631
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.