miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 10706 0.93 0.327916
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10814 0.9 0.427818
Target:  5'- aCUCUAGUACAcGAUgUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAgAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10904 1 0.141371
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10934 0.93 0.319738
Target:  5'- aCUUUGGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11012 0.94 0.296126
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 11033 0.93 0.327916
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11132 0.86 0.622386
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUcAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11173 0.72 0.998016
Target:  5'- -----aUGCAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11233 1.09 0.040757
Target:  5'- aCUCUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11366 0.86 0.622386
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUcAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11442 0.86 0.633757
Target:  5'- --aUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11477 0.86 0.633757
Target:  5'- --aUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11567 0.86 0.599683
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCa- -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 11638 0.9 0.427818
Target:  5'- uUCUAGUACAUGAUgUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAgAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 11761 0.72 0.998016
Target:  5'- -----aUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 39872 0.66 1
Target:  5'- uCUCUcaaAGU-CAUGAUCgugUUGCggUUGUg -3'
miRNA:   3'- -GAGA---UCAuGUACUAGa--AACGaaAGCA- -5'
8513 3' -43.5 NC_002169.1 + 41767 0.68 0.999986
Target:  5'- gCUCca-UACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGaucAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 41868 0.66 0.999999
Target:  5'- aUUUcaUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAucAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 41997 0.78 0.943481
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 42065 0.83 0.756159
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGuaCUAGAAACGAAAGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.