miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 120235 0.73 0.997119
Target:  5'- uUgUAaUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAgAUcAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 120037 0.9 0.437759
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119797 0.93 0.319738
Target:  5'- aCUUUGGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119616 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 119600 0.84 0.712664
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119518 0.79 0.921056
Target:  5'- uUUUAGUACAcGAUCUUUGCUUuuaUCGa -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAA---AGCa -5'
8513 3' -43.5 NC_002169.1 + 119418 0.9 0.437759
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119322 0.67 0.999995
Target:  5'- uUCaUAG-AC--GAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAG-AUCaUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105501 0.82 0.787405
Target:  5'- ---cAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105406 0.74 0.994311
Target:  5'- aCUUUAaUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- -GAGAUcAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 105401 0.94 0.296126
Target:  5'- aCUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105290 1.11 0.033977
Target:  5'- aCUCUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -GAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105202 0.71 0.999125
Target:  5'- uUUUAaUACAcGAUCUUUGCUUUUGUc -3'
miRNA:   3'- gAGAUcAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105149 0.74 0.993342
Target:  5'- uUCgc--ACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaucaUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 105091 0.84 0.734631
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 105032 0.66 0.999999
Target:  5'- aUC-AGccUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUC--AUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104959 0.66 0.999999
Target:  5'- uUCaUAGU-CA--AUCUUUGCUUUCGUc -3'
miRNA:   3'- gAG-AUCAuGUacUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104952 0.94 0.266783
Target:  5'- gCUUcAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104833 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 104769 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.