miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 105290 1.11 0.033977
Target:  5'- aCUCUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -GAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11233 1.09 0.040757
Target:  5'- aCUCUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 52859 1.06 0.065958
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 71831 1.06 0.065958
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10904 1 0.141371
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53040 1 0.14547
Target:  5'- uUCUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 104952 0.94 0.266783
Target:  5'- gCUUcAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53317 0.94 0.281151
Target:  5'- uUC-AGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53121 0.94 0.281151
Target:  5'- uUC-AGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119616 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 105401 0.94 0.296126
Target:  5'- aCUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11012 0.94 0.296126
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 42255 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 104833 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 10934 0.93 0.319738
Target:  5'- aCUUUGGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119797 0.93 0.319738
Target:  5'- aCUUUGGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11033 0.93 0.327916
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10706 0.93 0.327916
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10814 0.9 0.427818
Target:  5'- aCUCUAGUACAcGAUgUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAgAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 42186 0.9 0.427818
Target:  5'- uUgUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAgAUCAUGUACUAGAAACGAAAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.