miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 41997 0.78 0.943481
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 11567 0.86 0.599683
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCa- -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 11442 0.86 0.633757
Target:  5'- --aUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119600 0.84 0.712664
Target:  5'- uUC-AGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105091 0.84 0.734631
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52782 0.83 0.777146
Target:  5'- aUC-GGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105501 0.82 0.787405
Target:  5'- ---cAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104769 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 52898 0.79 0.908077
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUAcUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 120037 0.9 0.437759
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119418 0.9 0.437759
Target:  5'- uUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10814 0.9 0.427818
Target:  5'- aCUCUAGUACAcGAUgUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAgAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104952 0.94 0.266783
Target:  5'- gCUUcAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53121 0.94 0.281151
Target:  5'- uUC-AGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 42255 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 104833 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 10934 0.93 0.319738
Target:  5'- aCUUUGGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 10706 0.93 0.327916
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11033 0.93 0.327916
Target:  5'- aCUCUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 42186 0.9 0.427818
Target:  5'- uUgUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAgAUCAUGUACUAGAAACGAAAGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.