miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 3' -43.5 NC_002169.1 + 105032 0.66 0.999999
Target:  5'- aUC-AGccUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUC--AUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119616 0.94 0.296126
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 10904 1 0.141371
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105290 1.11 0.033977
Target:  5'- aCUCUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -GAGAUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105149 0.74 0.993342
Target:  5'- uUCgc--ACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGaucaUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 52978 0.75 0.982345
Target:  5'- uUUUAGUACAccAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUacUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 53233 0.82 0.807395
Target:  5'- -----aUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 42065 0.83 0.756159
Target:  5'- aUUUAGUACucGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUCAUGuaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11132 0.86 0.622386
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGAUcAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11012 0.94 0.296126
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAGAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 11638 0.9 0.427818
Target:  5'- uUCUAGUACAUGAUgUUUGCUUUCa- -3'
miRNA:   3'- gAGAUCAUGUACUAgAAACGAAAGca -5'
8513 3' -43.5 NC_002169.1 + 42192 0.86 0.633757
Target:  5'- --aUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 104959 0.66 0.999999
Target:  5'- uUCaUAGU-CA--AUCUUUGCUUUCGUc -3'
miRNA:   3'- gAG-AUCAuGUacUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119797 0.93 0.319738
Target:  5'- aCUUUGGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11761 0.72 0.998016
Target:  5'- -----aUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagaucAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 11477 0.86 0.633757
Target:  5'- --aUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gagAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 105401 0.94 0.296126
Target:  5'- aCUUUAGUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- -GAGAUCAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 53317 0.94 0.281151
Target:  5'- uUC-AGUACAUGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAGaUCAUGUACUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 120235 0.73 0.997119
Target:  5'- uUgUAaUACAcGAUCUUUGCUUUCGUc -3'
miRNA:   3'- gAgAUcAUGUaCUAGAAACGAAAGCA- -5'
8513 3' -43.5 NC_002169.1 + 119518 0.79 0.921056
Target:  5'- uUUUAGUACAcGAUCUUUGCUUuuaUCGa -3'
miRNA:   3'- gAGAUCAUGUaCUAGAAACGAA---AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.