miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 3' -43.5 NC_002169.1 + 105400 1.1 0.035339
Target:  5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11477 1.08 0.045112
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 119418 1.08 0.045112
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 120037 1.08 0.045112
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 119796 1.07 0.050944
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10935 1.07 0.050944
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10904 1.06 0.059272
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 42192 1.06 0.059272
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11442 1.06 0.059272
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 119602 1.05 0.068911
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11230 1.03 0.082476
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 105501 1.03 0.090181
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 52784 1.03 0.090181
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 71829 1.01 0.107684
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 52857 1.01 0.107684
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 53123 1.01 0.117589
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 53315 0.99 0.152602
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 104956 0.99 0.152602
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10817 0.98 0.161576
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAgAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 42065 0.97 0.175927
Target:  5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGuGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.