miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 3' -43.5 NC_002169.1 + 10326 0.67 0.999989
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUGCU--------AGAAACGaaAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10520 0.7 0.999623
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucaUG-UGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 10709 0.95 0.245133
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10713 0.74 0.991683
Target:  5'- uUUUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10817 0.98 0.161576
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAgAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10904 1.06 0.059272
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10935 1.07 0.050944
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11012 0.93 0.302888
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 11036 0.95 0.245133
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11132 0.92 0.3271
Target:  5'- gUUUAaUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11173 0.94 0.25182
Target:  5'- ----aUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11230 1.03 0.082476
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11281 0.7 0.999707
Target:  5'- aUUUAaUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUcAUGUGcUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 11366 0.9 0.408074
Target:  5'- uUUUAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11442 1.06 0.059272
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11477 1.08 0.045112
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11559 0.68 0.999971
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11570 0.84 0.714796
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGuGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 11636 0.81 0.838504
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAgAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 11761 0.92 0.318873
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.