Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8514 | 3' | -43.5 | NC_002169.1 | + | 27548 | 0.66 | 0.999999 |
Target: 5'- ----uUGCACGAUUg--GCgcgUCGUCa -3' miRNA: 3'- aaaucAUGUGCUAGaaaCGaa-AGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 29673 | 0.67 | 0.999997 |
Target: 5'- -----aACGCGAUCggUUGCcUUUUGUCu -3' miRNA: 3'- aaaucaUGUGCUAGa-AACG-AAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 31417 | 0.7 | 0.999623 |
Target: 5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3' miRNA: 3'- aaauCAUGUGCUAGAa-----ACgAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 41772 | 0.82 | 0.809972 |
Target: 5'- ----aUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucAUGuGCUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 41873 | 0.81 | 0.8197 |
Target: 5'- ----aUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaaucAUGUGCUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 41999 | 0.91 | 0.389024 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCaUCu -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 42065 | 0.97 | 0.175927 |
Target: 5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 42188 | 0.91 | 0.389024 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 42192 | 1.06 | 0.059272 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 42255 | 0.93 | 0.302888 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 42378 | 0.76 | 0.966621 |
Target: 5'- -----aACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 42453 | 0.79 | 0.910487 |
Target: 5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCA---UGUGcUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 52662 | 0.88 | 0.52227 |
Target: 5'- uUUUAGUACACGAUgUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUGCUAgAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 52784 | 1.03 | 0.090181 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 52857 | 1.01 | 0.107684 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 52898 | 0.78 | 0.929336 |
Target: 5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3' miRNA: 3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 52978 | 0.83 | 0.725897 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 53042 | 0.9 | 0.398476 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 53123 | 1.01 | 0.117589 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8514 | 3' | -43.5 | NC_002169.1 | + | 53233 | 0.88 | 0.48972 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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