miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 5' -42.5 NC_002169.1 + 105366 1.09 0.048493
Target:  5'- uUGGACAAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11602 1.08 0.0565
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 105571 1.03 0.11286
Target:  5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11098 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 105662 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 119582 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11604 1.01 0.142687
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 120201 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52944 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42030 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 119633 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 120073 0.97 0.218529
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11202 0.95 0.278995
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 53074 0.95 0.301921
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 41930 0.92 0.398132
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCaCAUAau -5'
8514 5' -42.5 NC_002169.1 + 42220 0.92 0.407801
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAuaau -5'
8514 5' -42.5 NC_002169.1 + 42289 0.92 0.407801
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAuaau -5'
8514 5' -42.5 NC_002169.1 + 105534 0.92 0.417616
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 105238 0.9 0.468757
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11317 0.9 0.468757
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.