miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 5' -42.5 NC_002169.1 + 10677 0.75 0.98968
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGC-ACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10743 0.77 0.977364
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10851 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10870 0.79 0.946999
Target:  5'- uUGGAC-GAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -ACCUGuUUUCGUUUCUAGC-------------ACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 10971 0.68 0.999996
Target:  5'- -cGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- acCUGUUUUcGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 10976 0.76 0.988112
Target:  5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUcUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11070 0.77 0.977364
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11098 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11198 0.89 0.534052
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCaCAUaau -5'
8514 5' -42.5 NC_002169.1 + 11202 0.95 0.278995
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11317 0.9 0.468757
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11330 0.83 0.812577
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACaUAAu -5'
8514 5' -42.5 NC_002169.1 + 11443 0.87 0.613811
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11602 1.08 0.0565
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11604 1.01 0.142687
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11730 0.73 0.997638
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGC-------------ACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 26602 0.66 1
Target:  5'- cGGGCGugucGCGGAGcgcuacgauaGUCGUGUAUUu -3'
miRNA:   3'- aCCUGUuuu-CGUUUC----------UAGCACAUAAu -5'
8514 5' -42.5 NC_002169.1 + 29549 0.67 0.999999
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUAa-- -3'
miRNA:   3'- -ACCUGUUUUcGUUUCUag-CACAUaau -5'
8514 5' -42.5 NC_002169.1 + 37286 0.67 1
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- aCCU-GUU--UUCGUUUCUAGC-ACauaau -5'
8514 5' -42.5 NC_002169.1 + 41902 0.72 0.99959
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUcUAGCaCAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.