miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 5' -42.5 NC_002169.1 + 41930 0.92 0.398132
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCaCAUAau -5'
8514 5' -42.5 NC_002169.1 + 42029 0.88 0.602284
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAau -5'
8514 5' -42.5 NC_002169.1 + 42030 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42158 0.84 0.760952
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42220 0.92 0.407801
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAuaau -5'
8514 5' -42.5 NC_002169.1 + 42289 0.92 0.407801
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAuaau -5'
8514 5' -42.5 NC_002169.1 + 42348 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42417 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52696 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52817 0.75 0.98968
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAgCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52823 0.7 0.99994
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUcUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52934 0.71 0.999856
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCaCAUAau -5'
8514 5' -42.5 NC_002169.1 + 52944 1.01 0.142687
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53062 0.74 0.996648
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAgcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53074 0.95 0.301921
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 53154 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53202 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53282 0.77 0.977364
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 64769 0.66 1
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuUGUc- -3'
miRNA:   3'- -ACCUGUU---UUCGUuuCUAGCAcAUAau -5'
8514 5' -42.5 NC_002169.1 + 71668 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.