miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 5' -42.5 NC_002169.1 + 120073 0.97 0.218529
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11202 0.95 0.278995
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 53074 0.95 0.301921
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 42220 0.92 0.407801
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAuaau -5'
8514 5' -42.5 NC_002169.1 + 42289 0.92 0.407801
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAuaau -5'
8514 5' -42.5 NC_002169.1 + 52696 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 105443 0.88 0.556555
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAau -5'
8514 5' -42.5 NC_002169.1 + 104867 0.9 0.500937
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAg-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCaCAUaau -5'
8514 5' -42.5 NC_002169.1 + 105238 0.9 0.468757
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11317 0.9 0.468757
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 105534 0.92 0.417616
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 11730 0.73 0.997638
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGC-------------ACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 104995 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53202 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42417 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 42348 0.71 0.999753
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 52823 0.7 0.99994
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUcUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 37286 0.67 1
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- aCCU-GUU--UUCGUUUCUAGC-ACauaau -5'
8514 5' -42.5 NC_002169.1 + 64769 0.66 1
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuUGUc- -3'
miRNA:   3'- -ACCUGUU---UUCGUuuCUAGCAcAUAau -5'
8514 5' -42.5 NC_002169.1 + 105366 1.09 0.048493
Target:  5'- uUGGACAAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCACAUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.