miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8515 5' -50.9 NC_002169.1 + 103704 0.66 0.990695
Target:  5'- aCGUgAUCGUCGguauuuuccgcaGGCCUcuACCAAACGUAu -3'
miRNA:   3'- -GCGaUAGCGGU------------UUGGG--UGGUUUGCAU- -5'
8515 5' -50.9 NC_002169.1 + 85861 0.66 0.990695
Target:  5'- cCGCUAaCGUCGAAUgCGCCGucGGCGa- -3'
miRNA:   3'- -GCGAUaGCGGUUUGgGUGGU--UUGCau -5'
8515 5' -50.9 NC_002169.1 + 27616 0.66 0.990695
Target:  5'- aGUUuggCGCCAAuacGCCCACCAuuCa-- -3'
miRNA:   3'- gCGAua-GCGGUU---UGGGUGGUuuGcau -5'
8515 5' -50.9 NC_002169.1 + 19098 0.66 0.989352
Target:  5'- aCGUUGUucucgaCGCCGuAGCCCACCAGcaGCa-- -3'
miRNA:   3'- -GCGAUA------GCGGU-UUGGGUGGUU--UGcau -5'
8515 5' -50.9 NC_002169.1 + 75163 0.66 0.986218
Target:  5'- cCGCUAUCgaGCUGAGCCgCAUucaauaCGAACGUGa -3'
miRNA:   3'- -GCGAUAG--CGGUUUGG-GUG------GUUUGCAU- -5'
8515 5' -50.9 NC_002169.1 + 52229 0.66 0.984406
Target:  5'- uGCg--CGUCAAGCCCggcACCGAaucgcACGUAg -3'
miRNA:   3'- gCGauaGCGGUUUGGG---UGGUU-----UGCAU- -5'
8515 5' -50.9 NC_002169.1 + 77998 0.66 0.984406
Target:  5'- uGCg--UGCCGAuCCCGCCGuGCGa- -3'
miRNA:   3'- gCGauaGCGGUUuGGGUGGUuUGCau -5'
8515 5' -50.9 NC_002169.1 + 30941 0.66 0.98242
Target:  5'- gCGC-AUCGCCAAaaacaAUCCGCUGucGGCGUGc -3'
miRNA:   3'- -GCGaUAGCGGUU-----UGGGUGGU--UUGCAU- -5'
8515 5' -50.9 NC_002169.1 + 105764 0.67 0.980249
Target:  5'- aCGCUAUCGacCCAAAUCCcUCAAauGCGUc -3'
miRNA:   3'- -GCGAUAGC--GGUUUGGGuGGUU--UGCAu -5'
8515 5' -50.9 NC_002169.1 + 127524 0.67 0.977884
Target:  5'- uCGCUucgucGUCGCUAGAUCCGCUuu-CGUc -3'
miRNA:   3'- -GCGA-----UAGCGGUUUGGGUGGuuuGCAu -5'
8515 5' -50.9 NC_002169.1 + 133485 0.67 0.972537
Target:  5'- aCGC-GUCgGCCAAACCCuguaugccgacGCCGAugGg- -3'
miRNA:   3'- -GCGaUAG-CGGUUUGGG-----------UGGUUugCau -5'
8515 5' -50.9 NC_002169.1 + 130876 0.67 0.972537
Target:  5'- aGCUAcUCGCCAAuuuaauauuguGCUCGCCAAAUu-- -3'
miRNA:   3'- gCGAU-AGCGGUU-----------UGGGUGGUUUGcau -5'
8515 5' -50.9 NC_002169.1 + 84700 0.67 0.972537
Target:  5'- aCGaUGUCGCCAAACCCucuacuuucGCCGcccGCGUc -3'
miRNA:   3'- -GCgAUAGCGGUUUGGG---------UGGUu--UGCAu -5'
8515 5' -50.9 NC_002169.1 + 80247 0.67 0.972247
Target:  5'- cCGCUcacgaaacccaucGUCGCCGAACCCAa-AAACa-- -3'
miRNA:   3'- -GCGA-------------UAGCGGUUUGGGUggUUUGcau -5'
8515 5' -50.9 NC_002169.1 + 30331 0.68 0.966315
Target:  5'- cCGCUcacGUUGCCG---CCGCCGAugGUGg -3'
miRNA:   3'- -GCGA---UAGCGGUuugGGUGGUUugCAU- -5'
8515 5' -50.9 NC_002169.1 + 128135 0.68 0.95916
Target:  5'- gGCUGUCGCgAAGCggcgugCUACCGGugGUc -3'
miRNA:   3'- gCGAUAGCGgUUUG------GGUGGUUugCAu -5'
8515 5' -50.9 NC_002169.1 + 102213 0.69 0.936903
Target:  5'- gGCUcUCGUCAAuCCCGCC-AACGa- -3'
miRNA:   3'- gCGAuAGCGGUUuGGGUGGuUUGCau -5'
8515 5' -50.9 NC_002169.1 + 55485 0.71 0.880414
Target:  5'- cCGCUGUCGUCGucgucaCCGCCAAACc-- -3'
miRNA:   3'- -GCGAUAGCGGUuug---GGUGGUUUGcau -5'
8515 5' -50.9 NC_002169.1 + 32413 0.72 0.831693
Target:  5'- aGCUGUCGCCGAACUguaCGCCAAc---- -3'
miRNA:   3'- gCGAUAGCGGUUUGG---GUGGUUugcau -5'
8515 5' -50.9 NC_002169.1 + 122148 0.72 0.822824
Target:  5'- aCGCUAUUGCCGucgCCGCCAcgauGAUGUAa -3'
miRNA:   3'- -GCGAUAGCGGUuugGGUGGU----UUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.