Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 96378 | 0.72 | 0.984954 |
Target: 5'- -cUGAACGAU--GCGGCC--ACGGCGc -3' miRNA: 3'- caAUUUGCUAagUGCCGGuuUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 101708 | 0.66 | 0.999823 |
Target: 5'- aGUU--GCGAUUCaaacGCGGCCucgguucGCGGCa -3' miRNA: 3'- -CAAuuUGCUAAG----UGCCGGuu-----UGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 102104 | 0.66 | 0.999896 |
Target: 5'- uUUGGAauUGA--CGCGGCCGGAgAGCGc -3' miRNA: 3'- cAAUUU--GCUaaGUGCCGGUUUgUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 106366 | 0.72 | 0.978387 |
Target: 5'- -gUAAAUGucUCGCGGCCAGuCGGUGa -3' miRNA: 3'- caAUUUGCuaAGUGCCGGUUuGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 107951 | 1.09 | 0.022102 |
Target: 5'- gGUUAAACGAUUCACGGCCAAACAGCGc -3' miRNA: 3'- -CAAUUUGCUAAGUGCCGGUUUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 110251 | 0.74 | 0.959283 |
Target: 5'- ---cGGCG-UUCACGGCCAAAagGGCGu -3' miRNA: 3'- caauUUGCuAAGUGCCGGUUUg-UCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 111836 | 0.73 | 0.975785 |
Target: 5'- ----cGCG-UUCACGGCCAucgcCAGCGu -3' miRNA: 3'- caauuUGCuAAGUGCCGGUuu--GUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 112412 | 0.66 | 0.999818 |
Target: 5'- ---cGACGAagucaaacaUCACGGCUAcgccgagGGCAGCGg -3' miRNA: 3'- caauUUGCUa--------AGUGCCGGU-------UUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 113458 | 0.69 | 0.99833 |
Target: 5'- -aUGGACGcgUCGCGuCCAcguAGCAGCu -3' miRNA: 3'- caAUUUGCuaAGUGCcGGU---UUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 117083 | 0.67 | 0.999734 |
Target: 5'- aGUUGGuacACGAaaaaucgcaauccaUCAUGGCCGAAUAGCc -3' miRNA: 3'- -CAAUU---UGCUa-------------AGUGCCGGUUUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 118719 | 0.66 | 0.999864 |
Target: 5'- ---cAACaAUUCACGGCCGAucuACAGg- -3' miRNA: 3'- caauUUGcUAAGUGCCGGUU---UGUCgc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 125329 | 0.74 | 0.955231 |
Target: 5'- cGUUGA-CGAgagUC-CGGCCgAAGCGGCGa -3' miRNA: 3'- -CAAUUuGCUa--AGuGCCGG-UUUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 129498 | 0.7 | 0.993341 |
Target: 5'- uUUGAuguACGAUUCGCGGCCGucuucggauuuucGuuuGCGGCa -3' miRNA: 3'- cAAUU---UGCUAAGUGCCGGU-------------U---UGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 134602 | 0.66 | 0.999864 |
Target: 5'- ----uGCGcgUCGCucuGGCCAuucACGGCGa -3' miRNA: 3'- caauuUGCuaAGUG---CCGGUu--UGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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