Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8516 | 5' | -46.3 | NC_002169.1 | + | 1326 | 0.67 | 0.999529 |
Target: 5'- --gAGACGAUg-ACGGCgGcGGCGGCGg -3' miRNA: 3'- caaUUUGCUAagUGCCGgU-UUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 17092 | 0.71 | 0.986764 |
Target: 5'- --gGAACgGAUauugcguucaUCACGGCUcAACAGCGg -3' miRNA: 3'- caaUUUG-CUA----------AGUGCCGGuUUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 27134 | 0.69 | 0.996492 |
Target: 5'- -gUAGGCGGgcgUCgggaagACGGCCAAgauucggGCGGCGg -3' miRNA: 3'- caAUUUGCUa--AG------UGCCGGUU-------UGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 28576 | 0.66 | 0.999941 |
Target: 5'- --cAGAUGGUUCAUuacagugaacgaGGCCA-ACGGCa -3' miRNA: 3'- caaUUUGCUAAGUG------------CCGGUuUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 36876 | 0.67 | 0.999707 |
Target: 5'- --cGGAUGucagccUCACGGCCAGAucguCAGCa -3' miRNA: 3'- caaUUUGCua----AGUGCCGGUUU----GUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 37703 | 0.73 | 0.963076 |
Target: 5'- --cGAACGGUUCuCGGaCAAACAGUGu -3' miRNA: 3'- caaUUUGCUAAGuGCCgGUUUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 42938 | 0.66 | 0.999941 |
Target: 5'- --cGAGCGcuagCACGGCUu-GCGGCa -3' miRNA: 3'- caaUUUGCuaa-GUGCCGGuuUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 44232 | 0.69 | 0.997982 |
Target: 5'- --cGAACGAUgcCACGGCCGGAUAa-- -3' miRNA: 3'- caaUUUGCUAa-GUGCCGGUUUGUcgc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 45891 | 0.69 | 0.997574 |
Target: 5'- -aUGAugGuggUgACGGCgGGACAGCa -3' miRNA: 3'- caAUUugCua-AgUGCCGgUUUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 49723 | 0.7 | 0.994962 |
Target: 5'- ----cACGAUUCACGucuacauugcccccGCCAuuGGCGGCGa -3' miRNA: 3'- caauuUGCUAAGUGC--------------CGGU--UUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 51074 | 0.68 | 0.998599 |
Target: 5'- --gAGACGuUUUAUGGCCAauucgagGACGGCu -3' miRNA: 3'- caaUUUGCuAAGUGCCGGU-------UUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 55231 | 0.66 | 0.999941 |
Target: 5'- ---cGACGAUUCACuauaucucgacGCCAAACuGGCGu -3' miRNA: 3'- caauUUGCUAAGUGc----------CGGUUUG-UCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 57150 | 0.67 | 0.999529 |
Target: 5'- ---cGGCGGcgUCcaaaGCGGCCAcGGCGGCGg -3' miRNA: 3'- caauUUGCUa-AG----UGCCGGU-UUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 69840 | 0.66 | 0.999941 |
Target: 5'- -gUAGACcAUUCcguCGGCCucAAGCGGCa -3' miRNA: 3'- caAUUUGcUAAGu--GCCGG--UUUGUCGc -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 71881 | 0.66 | 0.999864 |
Target: 5'- --gAAACGAUcguaguCGGCCucGACAGUGg -3' miRNA: 3'- caaUUUGCUAagu---GCCGGu-UUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 75866 | 0.68 | 0.999263 |
Target: 5'- uGUUAGACGAcgUCgAUGGU--GACGGCGa -3' miRNA: 3'- -CAAUUUGCUa-AG-UGCCGguUUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 79778 | 0.68 | 0.999087 |
Target: 5'- --aGAACGGcgaUCAucUGGCCAGcgGCAGCGu -3' miRNA: 3'- caaUUUGCUa--AGU--GCCGGUU--UGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 80042 | 0.68 | 0.999263 |
Target: 5'- ---cGACGAUcuuuUCGCGGgCG-GCAGCGa -3' miRNA: 3'- caauUUGCUA----AGUGCCgGUuUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 80094 | 0.68 | 0.999409 |
Target: 5'- uGUUGGACGGUauggUgGCGcGCUgcaaGAGCAGCGu -3' miRNA: 3'- -CAAUUUGCUA----AgUGC-CGG----UUUGUCGC- -5' |
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8516 | 5' | -46.3 | NC_002169.1 | + | 87567 | 0.66 | 0.999896 |
Target: 5'- --cAAGCGcgUCgucuGCGGCCAGAUuGCc -3' miRNA: 3'- caaUUUGCuaAG----UGCCGGUUUGuCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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