miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8516 5' -46.3 NC_002169.1 + 125329 0.74 0.955231
Target:  5'- cGUUGA-CGAgagUC-CGGCCgAAGCGGCGa -3'
miRNA:   3'- -CAAUUuGCUa--AGuGCCGG-UUUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 69840 0.66 0.999941
Target:  5'- -gUAGACcAUUCcguCGGCCucAAGCGGCa -3'
miRNA:   3'- caAUUUGcUAAGu--GCCGG--UUUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 55231 0.66 0.999941
Target:  5'- ---cGACGAUUCACuauaucucgacGCCAAACuGGCGu -3'
miRNA:   3'- caauUUGCUAAGUGc----------CGGUUUG-UCGC- -5'
8516 5' -46.3 NC_002169.1 + 87567 0.66 0.999896
Target:  5'- --cAAGCGcgUCgucuGCGGCCAGAUuGCc -3'
miRNA:   3'- caaUUUGCuaAG----UGCCGGUUUGuCGc -5'
8516 5' -46.3 NC_002169.1 + 118719 0.66 0.999864
Target:  5'- ---cAACaAUUCACGGCCGAucuACAGg- -3'
miRNA:   3'- caauUUGcUAAGUGCCGGUU---UGUCgc -5'
8516 5' -46.3 NC_002169.1 + 71881 0.66 0.999864
Target:  5'- --gAAACGAUcguaguCGGCCucGACAGUGg -3'
miRNA:   3'- caaUUUGCUAagu---GCCGGu-UUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 101708 0.66 0.999823
Target:  5'- aGUU--GCGAUUCaaacGCGGCCucgguucGCGGCa -3'
miRNA:   3'- -CAAuuUGCUAAG----UGCCGGuu-----UGUCGc -5'
8516 5' -46.3 NC_002169.1 + 117083 0.67 0.999734
Target:  5'- aGUUGGuacACGAaaaaucgcaauccaUCAUGGCCGAAUAGCc -3'
miRNA:   3'- -CAAUU---UGCUa-------------AGUGCCGGUUUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 36876 0.67 0.999707
Target:  5'- --cGGAUGucagccUCACGGCCAGAucguCAGCa -3'
miRNA:   3'- caaUUUGCua----AGUGCCGGUUU----GUCGc -5'
8516 5' -46.3 NC_002169.1 + 1326 0.67 0.999529
Target:  5'- --gAGACGAUg-ACGGCgGcGGCGGCGg -3'
miRNA:   3'- caaUUUGCUAagUGCCGgU-UUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 80042 0.68 0.999263
Target:  5'- ---cGACGAUcuuuUCGCGGgCG-GCAGCGa -3'
miRNA:   3'- caauUUGCUA----AGUGCCgGUuUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 110251 0.74 0.959283
Target:  5'- ---cGGCG-UUCACGGCCAAAagGGCGu -3'
miRNA:   3'- caauUUGCuAAGUGCCGGUUUg-UCGC- -5'
8516 5' -46.3 NC_002169.1 + 37703 0.73 0.963076
Target:  5'- --cGAACGGUUCuCGGaCAAACAGUGu -3'
miRNA:   3'- caaUUUGCUAAGuGCCgGUUUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 96378 0.72 0.984954
Target:  5'- -cUGAACGAU--GCGGCC--ACGGCGc -3'
miRNA:   3'- caAUUUGCUAagUGCCGGuuUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 129498 0.7 0.993341
Target:  5'- uUUGAuguACGAUUCGCGGCCGucuucggauuuucGuuuGCGGCa -3'
miRNA:   3'- cAAUU---UGCUAAGUGCCGGU-------------U---UGUCGc -5'
8516 5' -46.3 NC_002169.1 + 45891 0.69 0.997574
Target:  5'- -aUGAugGuggUgACGGCgGGACAGCa -3'
miRNA:   3'- caAUUugCua-AgUGCCGgUUUGUCGc -5'
8516 5' -46.3 NC_002169.1 + 44232 0.69 0.997982
Target:  5'- --cGAACGAUgcCACGGCCGGAUAa-- -3'
miRNA:   3'- caaUUUGCUAa-GUGCCGGUUUGUcgc -5'
8516 5' -46.3 NC_002169.1 + 79778 0.68 0.999087
Target:  5'- --aGAACGGcgaUCAucUGGCCAGcgGCAGCGu -3'
miRNA:   3'- caaUUUGCUa--AGU--GCCGGUU--UGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 107951 1.09 0.022102
Target:  5'- gGUUAAACGAUUCACGGCCAAACAGCGc -3'
miRNA:   3'- -CAAUUUGCUAAGUGCCGGUUUGUCGC- -5'
8516 5' -46.3 NC_002169.1 + 42938 0.66 0.999941
Target:  5'- --cGAGCGcuagCACGGCUu-GCGGCa -3'
miRNA:   3'- caaUUUGCuaa-GUGCCGGuuUGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.