Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 95491 | 0.67 | 0.85595 |
Target: 5'- ---cGCGugGACGACGCgccauCCCAa -3' miRNA: 3'- cccuCGCugCUGCUGCGauaacGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 28047 | 0.67 | 0.85595 |
Target: 5'- cGGAcgagGCGAuCGACG-CGCUcgUGCCg- -3' miRNA: 3'- cCCU----CGCU-GCUGCuGCGAuaACGGgu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 106137 | 0.67 | 0.876948 |
Target: 5'- cGGGAGCGAUGAUGAUGaggaaa-CCGa -3' miRNA: 3'- -CCCUCGCUGCUGCUGCgauaacgGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 92913 | 0.67 | 0.883337 |
Target: 5'- aGGAgGCGACGACGAcaaagcaauCGCaGUuuuuuuaguuuuuuUGCCCGu -3' miRNA: 3'- cCCU-CGCUGCUGCU---------GCGaUA--------------ACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 46443 | 0.67 | 0.883337 |
Target: 5'- gGGuGAGCG-CgGACGAUGUUcugcaucuucugcgAUUGCCCGc -3' miRNA: 3'- -CC-CUCGCuG-CUGCUGCGA--------------UAACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 53624 | 0.67 | 0.885426 |
Target: 5'- cGGcGGCGGCGACGAC-CUGauacUUGgCCGc -3' miRNA: 3'- -CCcUCGCUGCUGCUGcGAU----AACgGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 34509 | 0.67 | 0.892243 |
Target: 5'- ---uGCGGCGGCGGCGCcGUcGCCg- -3' miRNA: 3'- cccuCGCUGCUGCUGCGaUAaCGGgu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 85735 | 0.66 | 0.905185 |
Target: 5'- aGGGGCGcaaauuCGACGcGCGCaucgacacuUUGCCCAc -3' miRNA: 3'- cCCUCGCu-----GCUGC-UGCGau-------AACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 19198 | 0.66 | 0.905185 |
Target: 5'- --cGGCGuCGACGGCuaucGCUAUcggGCCCAc -3' miRNA: 3'- cccUCGCuGCUGCUG----CGAUAa--CGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 2144 | 0.66 | 0.917182 |
Target: 5'- gGGGuacGCGuCGACGACGCcgcaauaCCCAc -3' miRNA: 3'- -CCCu--CGCuGCUGCUGCGauaac--GGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 117579 | 0.66 | 0.917182 |
Target: 5'- cGGcGGCGACGACGACGacCUcaaaaaccGUUGUCUc -3' miRNA: 3'- -CCcUCGCUGCUGCUGC--GA--------UAACGGGu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 125407 | 0.66 | 0.922823 |
Target: 5'- cGGGAGCGGgcuCGACGuugaaagcggguACGUcGUcgaUGCCCu -3' miRNA: 3'- -CCCUCGCU---GCUGC------------UGCGaUA---ACGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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