miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8518 3' -55.5 NC_002169.1 + 109910 1.11 0.00238
Target:  5'- cGGGAGCGACGACGACGCUAUUGCCCAc -3'
miRNA:   3'- -CCCUCGCUGCUGCUGCGAUAACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 43474 0.73 0.537503
Target:  5'- gGGGGGCGugGGCGAaCGUUucacGCUCAg -3'
miRNA:   3'- -CCCUCGCugCUGCU-GCGAuaa-CGGGU- -5'
8518 3' -55.5 NC_002169.1 + 124927 0.72 0.618676
Target:  5'- uGGGGGCGGCGGCGGCgGCggcgGCgaCAg -3'
miRNA:   3'- -CCCUCGCUGCUGCUG-CGauaaCGg-GU- -5'
8518 3' -55.5 NC_002169.1 + 125733 0.72 0.618676
Target:  5'- -cGAGUGGCGGCGACGCgcgaagGCgCCGa -3'
miRNA:   3'- ccCUCGCUGCUGCUGCGauaa--CG-GGU- -5'
8518 3' -55.5 NC_002169.1 + 1286 0.72 0.628944
Target:  5'- --cGGCGACGGCGGCaGCggaaauugUGCCCAg -3'
miRNA:   3'- cccUCGCUGCUGCUG-CGaua-----ACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 92773 0.7 0.700426
Target:  5'- -cGAGCGucuugagaccgcACG-CGACGCUGUgGCCCAu -3'
miRNA:   3'- ccCUCGC------------UGCuGCUGCGAUAaCGGGU- -5'
8518 3' -55.5 NC_002169.1 + 74491 0.7 0.738236
Target:  5'- uGGGuucGuCGACGACGACGCcuuuauauuguaGUUGCCUg -3'
miRNA:   3'- -CCCu--C-GCUGCUGCUGCGa-----------UAACGGGu -5'
8518 3' -55.5 NC_002169.1 + 97060 0.7 0.749921
Target:  5'- --cGGUGuCGACGACGCUGccggugaUGCCCAu -3'
miRNA:   3'- cccUCGCuGCUGCUGCGAUa------ACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 1564 0.7 0.749921
Target:  5'- cGGcGGUGGCGGCGGCGCguaagAUUGuUCCGc -3'
miRNA:   3'- -CCcUCGCUGCUGCUGCGa----UAAC-GGGU- -5'
8518 3' -55.5 NC_002169.1 + 39544 0.69 0.759545
Target:  5'- uGGcGGCGAUGACGACgGCgg-UGCCg- -3'
miRNA:   3'- -CCcUCGCUGCUGCUG-CGauaACGGgu -5'
8518 3' -55.5 NC_002169.1 + 15978 0.69 0.769055
Target:  5'- cGGcGGCGgucACGACGACGCUGUcGUCaCAc -3'
miRNA:   3'- -CCcUCGC---UGCUGCUGCGAUAaCGG-GU- -5'
8518 3' -55.5 NC_002169.1 + 63303 0.69 0.778442
Target:  5'- -aGAGCGGCGucuagagcuGCGGCGCUugcGUggccUGCCCGg -3'
miRNA:   3'- ccCUCGCUGC---------UGCUGCGA---UA----ACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 40179 0.69 0.796811
Target:  5'- ---cGCGGCGGCGACGaaaaaGCCCAu -3'
miRNA:   3'- cccuCGCUGCUGCUGCgauaaCGGGU- -5'
8518 3' -55.5 NC_002169.1 + 25685 0.68 0.814581
Target:  5'- aGGAGCGACGGCGAacCGCcgggcGUcGCCg- -3'
miRNA:   3'- cCCUCGCUGCUGCU--GCGa----UAaCGGgu -5'
8518 3' -55.5 NC_002169.1 + 92730 0.68 0.831684
Target:  5'- -cGAGuCGACGACGGCGCggaacgucUUGCgCAu -3'
miRNA:   3'- ccCUC-GCUGCUGCUGCGau------AACGgGU- -5'
8518 3' -55.5 NC_002169.1 + 1980 0.68 0.839966
Target:  5'- uGGGuauuGCGGCGucGCGACGCguac-CCCAa -3'
miRNA:   3'- -CCCu---CGCUGC--UGCUGCGauaacGGGU- -5'
8518 3' -55.5 NC_002169.1 + 75524 0.68 0.839966
Target:  5'- uGGAGaCGACGACGACGacgacgauaCUAUUGUg-- -3'
miRNA:   3'- cCCUC-GCUGCUGCUGC---------GAUAACGggu -5'
8518 3' -55.5 NC_002169.1 + 62305 0.68 0.848057
Target:  5'- ----cCGACGACGACG-UAUUGCUCAg -3'
miRNA:   3'- cccucGCUGCUGCUGCgAUAACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 55632 0.68 0.848057
Target:  5'- -cGAGCGACGACGGauagcuuuuUGUUGUUGUCgAa -3'
miRNA:   3'- ccCUCGCUGCUGCU---------GCGAUAACGGgU- -5'
8518 3' -55.5 NC_002169.1 + 66915 0.68 0.848057
Target:  5'- uGGucuCGACGACGGCGCU---GUCCAu -3'
miRNA:   3'- cCCuc-GCUGCUGCUGCGAuaaCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.