Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 1286 | 0.72 | 0.628944 |
Target: 5'- --cGGCGACGGCGGCaGCggaaauugUGCCCAg -3' miRNA: 3'- cccUCGCUGCUGCUG-CGaua-----ACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 1564 | 0.7 | 0.749921 |
Target: 5'- cGGcGGUGGCGGCGGCGCguaagAUUGuUCCGc -3' miRNA: 3'- -CCcUCGCUGCUGCUGCGa----UAAC-GGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 1980 | 0.68 | 0.839966 |
Target: 5'- uGGGuauuGCGGCGucGCGACGCguac-CCCAa -3' miRNA: 3'- -CCCu---CGCUGC--UGCUGCGauaacGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 2144 | 0.66 | 0.917182 |
Target: 5'- gGGGuacGCGuCGACGACGCcgcaauaCCCAc -3' miRNA: 3'- -CCCu--CGCuGCUGCUGCGauaac--GGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 15978 | 0.69 | 0.769055 |
Target: 5'- cGGcGGCGgucACGACGACGCUGUcGUCaCAc -3' miRNA: 3'- -CCcUCGC---UGCUGCUGCGAUAaCGG-GU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 19198 | 0.66 | 0.905185 |
Target: 5'- --cGGCGuCGACGGCuaucGCUAUcggGCCCAc -3' miRNA: 3'- cccUCGCuGCUGCUG----CGAUAa--CGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 25685 | 0.68 | 0.814581 |
Target: 5'- aGGAGCGACGGCGAacCGCcgggcGUcGCCg- -3' miRNA: 3'- cCCUCGCUGCUGCU--GCGa----UAaCGGgu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 28047 | 0.67 | 0.85595 |
Target: 5'- cGGAcgagGCGAuCGACG-CGCUcgUGCCg- -3' miRNA: 3'- cCCU----CGCU-GCUGCuGCGAuaACGGgu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 34509 | 0.67 | 0.892243 |
Target: 5'- ---uGCGGCGGCGGCGCcGUcGCCg- -3' miRNA: 3'- cccuCGCUGCUGCUGCGaUAaCGGgu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 39544 | 0.69 | 0.759545 |
Target: 5'- uGGcGGCGAUGACGACgGCgg-UGCCg- -3' miRNA: 3'- -CCcUCGCUGCUGCUG-CGauaACGGgu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 40179 | 0.69 | 0.796811 |
Target: 5'- ---cGCGGCGGCGACGaaaaaGCCCAu -3' miRNA: 3'- cccuCGCUGCUGCUGCgauaaCGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 43474 | 0.73 | 0.537503 |
Target: 5'- gGGGGGCGugGGCGAaCGUUucacGCUCAg -3' miRNA: 3'- -CCCUCGCugCUGCU-GCGAuaa-CGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 46443 | 0.67 | 0.883337 |
Target: 5'- gGGuGAGCG-CgGACGAUGUUcugcaucuucugcgAUUGCCCGc -3' miRNA: 3'- -CC-CUCGCuG-CUGCUGCGA--------------UAACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 53624 | 0.67 | 0.885426 |
Target: 5'- cGGcGGCGGCGACGAC-CUGauacUUGgCCGc -3' miRNA: 3'- -CCcUCGCUGCUGCUGcGAU----AACgGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 55632 | 0.68 | 0.848057 |
Target: 5'- -cGAGCGACGACGGauagcuuuuUGUUGUUGUCgAa -3' miRNA: 3'- ccCUCGCUGCUGCU---------GCGAUAACGGgU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 62305 | 0.68 | 0.848057 |
Target: 5'- ----cCGACGACGACG-UAUUGCUCAg -3' miRNA: 3'- cccucGCUGCUGCUGCgAUAACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 63303 | 0.69 | 0.778442 |
Target: 5'- -aGAGCGGCGucuagagcuGCGGCGCUugcGUggccUGCCCGg -3' miRNA: 3'- ccCUCGCUGC---------UGCUGCGA---UA----ACGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 66915 | 0.68 | 0.848057 |
Target: 5'- uGGucuCGACGACGGCGCU---GUCCAu -3' miRNA: 3'- cCCuc-GCUGCUGCUGCGAuaaCGGGU- -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 74491 | 0.7 | 0.738236 |
Target: 5'- uGGGuucGuCGACGACGACGCcuuuauauuguaGUUGCCUg -3' miRNA: 3'- -CCCu--C-GCUGCUGCUGCGa-----------UAACGGGu -5' |
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8518 | 3' | -55.5 | NC_002169.1 | + | 75524 | 0.68 | 0.839966 |
Target: 5'- uGGAGaCGACGACGACGacgacgauaCUAUUGUg-- -3' miRNA: 3'- cCCUC-GCUGCUGCUGC---------GAUAACGggu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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