miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 27548 0.68 0.999999
Target:  5'- ----uUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- acauuAUGUGCUAGaaaCGaa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 29673 0.69 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- acauuaUGUGCUAGa-AACG-AAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 31414 0.73 0.998892
Target:  5'- cGgcGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aCauUAUGUGCUAGAa-----ACgAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 41053 0.7 0.999981
Target:  5'- cGUAAUcgaAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aCAUUA---UGUGCUAGAAACgaaaGCAG- -5'
8525 3' -42.3 NC_002169.1 + 41771 0.86 0.740805
Target:  5'- ---cAUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 41872 0.85 0.751629
Target:  5'- ---cAUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acauUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 41994 0.89 0.559928
Target:  5'- uUGUucAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- -ACA--UUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 42063 0.91 0.462266
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 42186 0.96 0.290755
Target:  5'- uUGUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -ACAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 42192 1.03 0.130112
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 42257 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 42378 0.78 0.967706
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 42447 0.78 0.967706
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 45715 0.69 0.999993
Target:  5'- aGUAucUGCGCGA-CUUggccgGCUaUCGUCg -3'
miRNA:   3'- aCAUu-AUGUGCUaGAAa----CGAaAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 52664 0.82 0.898844
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 52784 1 0.183282
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 52857 0.98 0.22869
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 52900 0.72 0.999726
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- acAUUAUGUGcUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 52976 0.77 0.981877
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGcUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 53042 0.87 0.685163
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.