miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 10520 0.72 0.999648
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acauuaUG-UGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 10709 0.91 0.472703
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10711 0.67 1
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- acAUUAUGUGcUAgAAACGAA----------AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10817 0.95 0.330594
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10902 1 0.173247
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10937 1.02 0.150279
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11010 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11036 0.91 0.472703
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11130 1 0.173247
Target:  5'- -uUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11171 1.02 0.13786
Target:  5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11230 1 0.178202
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11283 0.77 0.981877
Target:  5'- -uUAAUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGcUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11364 0.98 0.222532
Target:  5'- -uUAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11442 1.03 0.130112
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11477 1.05 0.099995
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11559 0.7 0.999973
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11570 0.8 0.942065
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11636 0.77 0.984034
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11764 1.03 0.130112
Target:  5'- -aUAAUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 25788 0.66 1
Target:  5'- cGgcAUGCGgGAUCgg-GUaUUUCGUCg -3'
miRNA:   3'- aCauUAUGUgCUAGaaaCG-AAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.