miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 119324 0.87 0.651017
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauUAUgUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 104956 0.96 0.290755
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10817 0.95 0.330594
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10709 0.91 0.472703
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11036 0.91 0.472703
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105093 0.91 0.472703
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 41994 0.89 0.559928
Target:  5'- uUGUucAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- -ACA--UUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105409 0.89 0.571194
Target:  5'- -uUAAUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 71637 0.89 0.582513
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 42186 0.96 0.290755
Target:  5'- uUGUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -ACAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105204 0.98 0.241439
Target:  5'- -uUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 104767 0.98 0.22869
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119420 1.03 0.133935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 120039 1.03 0.133935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11171 1.02 0.13786
Target:  5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119602 1.02 0.13786
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 10937 1.02 0.150279
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105501 1 0.178202
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 52784 1 0.183282
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 53123 0.98 0.22869
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.