miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 25788 0.66 1
Target:  5'- cGgcAUGCGgGAUCgg-GUaUUUCGUCg -3'
miRNA:   3'- aCauUAUGUgCUAGaaaCG-AAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11010 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 119516 0.87 0.662433
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 120235 1.14 0.03278
Target:  5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -ACAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 27548 0.68 0.999999
Target:  5'- ----uUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- acauuAUGUGCUAGaaaCGaa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 110097 0.68 0.999999
Target:  5'- uUGUAAUACuuGAUCUUggGCaccUCGUUu -3'
miRNA:   3'- -ACAUUAUGugCUAGAAa-CGaa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 41053 0.7 0.999981
Target:  5'- cGUAAUcgaAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aCAUUA---UGUGCUAGAAACgaaaGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11559 0.7 0.999973
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11636 0.77 0.984034
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105601 0.85 0.77287
Target:  5'- ---cAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acauUAUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 42378 0.78 0.967706
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105145 0.77 0.98599
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acauuaUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 127252 0.66 1
Target:  5'- ------cCACGAUCgcuucgUGCUcgUCGUCa -3'
miRNA:   3'- acauuauGUGCUAGaa----ACGAa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 42447 0.78 0.967706
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 131519 0.66 1
Target:  5'- aGUAuUugACGAucgauUCUUUGUg-UCGUCg -3'
miRNA:   3'- aCAUuAugUGCU-----AGAAACGaaAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 104968 0.71 0.999905
Target:  5'- aUGUAucguuucAUAguCaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -ACAU-------UAUguGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105026 0.84 0.823009
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119614 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 10711 0.67 1
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- acAUUAUGUGcUAgAAACGAA----------AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 29673 0.69 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- acauuaUGUGCUAGa-AACG-AAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.