Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8525 | 3' | -42.3 | NC_002169.1 | + | 120235 | 1.14 | 0.03278 |
Target: 5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -ACAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11477 | 1.05 | 0.099995 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105398 | 1.05 | 0.102986 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 42192 | 1.03 | 0.130112 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11764 | 1.03 | 0.130112 |
Target: 5'- -aUAAUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11442 | 1.03 | 0.130112 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 120039 | 1.03 | 0.133935 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 119420 | 1.03 | 0.133935 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 119602 | 1.02 | 0.13786 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11171 | 1.02 | 0.13786 |
Target: 5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 10937 | 1.02 | 0.150279 |
Target: 5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 119794 | 1.02 | 0.150279 |
Target: 5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 10902 | 1 | 0.173247 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11130 | 1 | 0.173247 |
Target: 5'- -uUAAUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11230 | 1 | 0.178202 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105501 | 1 | 0.178202 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 52784 | 1 | 0.183282 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105695 | 0.99 | 0.210638 |
Target: 5'- uUGUAAUACACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- -ACAUUAUGUGCUAGAAACGAAAGcAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11364 | 0.98 | 0.222532 |
Target: 5'- -uUAAUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 71829 | 0.98 | 0.22869 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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