miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 131519 0.66 1
Target:  5'- aGUAuUugACGAucgauUCUUUGUg-UCGUCg -3'
miRNA:   3'- aCAUuAugUGCU-----AGAAACGaaAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 127252 0.66 1
Target:  5'- ------cCACGAUCgcuucgUGCUcgUCGUCa -3'
miRNA:   3'- acauuauGUGCUAGaa----ACGAa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 125655 0.68 0.999999
Target:  5'- gUGUAGUugGCGGgcg-UGUUggCGUCa -3'
miRNA:   3'- -ACAUUAugUGCUagaaACGAaaGCAG- -5'
8525 3' -42.3 NC_002169.1 + 120235 1.14 0.03278
Target:  5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -ACAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 120039 1.03 0.133935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119794 1.02 0.150279
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119614 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 119602 1.02 0.13786
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119516 0.87 0.662433
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 119420 1.03 0.133935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 119324 0.87 0.651017
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauUAUgUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 110097 0.68 0.999999
Target:  5'- uUGUAAUACuuGAUCUUggGCaccUCGUUu -3'
miRNA:   3'- -ACAUUAUGugCUAGAAa-CGaa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105695 0.99 0.210638
Target:  5'- uUGUAAUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- -ACAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105601 0.85 0.77287
Target:  5'- ---cAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acauUAUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105501 1 0.178202
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105409 0.89 0.571194
Target:  5'- -uUAAUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105398 1.05 0.102986
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105322 0.77 0.987757
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGcUAgAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105287 0.93 0.392864
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAg -5'
8525 3' -42.3 NC_002169.1 + 105204 0.98 0.241439
Target:  5'- -uUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.