Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8525 | 3' | -42.3 | NC_002169.1 | + | 11036 | 0.91 | 0.472703 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 10709 | 0.91 | 0.472703 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 42063 | 0.91 | 0.462266 |
Target: 5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105287 | 0.93 | 0.392864 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAg -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 10817 | 0.95 | 0.330594 |
Target: 5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAgAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 53235 | 0.96 | 0.290755 |
Target: 5'- --cAAUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 42186 | 0.96 | 0.290755 |
Target: 5'- uUGUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -ACAUUAUGUGCUAGAAACGAAAGcAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 104956 | 0.96 | 0.290755 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 53315 | 0.96 | 0.290755 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105204 | 0.98 | 0.241439 |
Target: 5'- -uUAAUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 71829 | 0.98 | 0.22869 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 52857 | 0.98 | 0.22869 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 104767 | 0.98 | 0.22869 |
Target: 5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 53123 | 0.98 | 0.22869 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11364 | 0.98 | 0.222532 |
Target: 5'- -uUAAUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105695 | 0.99 | 0.210638 |
Target: 5'- uUGUAAUACACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- -ACAUUAUGUGCUAGAAACGAAAGcAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 52784 | 1 | 0.183282 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 11230 | 1 | 0.178202 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 105501 | 1 | 0.178202 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- acaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8525 | 3' | -42.3 | NC_002169.1 | + | 10902 | 1 | 0.173247 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- acAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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