miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 11283 0.77 0.981877
Target:  5'- -uUAAUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGcUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 42447 0.78 0.967706
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 42378 0.78 0.967706
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11570 0.8 0.942065
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 52664 0.82 0.898844
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105026 0.84 0.823009
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauuAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105601 0.85 0.77287
Target:  5'- ---cAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- acauUAUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 41872 0.85 0.751629
Target:  5'- ---cAUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acauUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 41771 0.86 0.740805
Target:  5'- ---cAUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauUAUGuGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 53042 0.87 0.685163
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 104835 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 42257 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 119614 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11010 0.87 0.673819
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 119516 0.87 0.662433
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 119324 0.87 0.651017
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acauUAUgUGCUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 71637 0.89 0.582513
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acaUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 105409 0.89 0.571194
Target:  5'- -uUAAUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- acAUUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 41994 0.89 0.559928
Target:  5'- uUGUucAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- -ACA--UUAUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 10709 0.91 0.472703
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- acAUUAUGuGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.