miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8526 5' -51.4 NC_002169.1 + 121128 0.66 0.988444
Target:  5'- -aUGuuGGUCAaggGCGG-CGUCGAGCc -3'
miRNA:   3'- aaACugCUAGUg--CGCCaGCAGCUUGu -5'
8526 5' -51.4 NC_002169.1 + 91708 0.66 0.988444
Target:  5'- -aUGGCGAcgGCGUcGUCGUCGA-CAg -3'
miRNA:   3'- aaACUGCUagUGCGcCAGCAGCUuGU- -5'
8526 5' -51.4 NC_002169.1 + 57759 0.66 0.988144
Target:  5'- --cGACGuaaaugucgugCACGuCGG-CGUCGGACAu -3'
miRNA:   3'- aaaCUGCua---------GUGC-GCCaGCAGCUUGU- -5'
8526 5' -51.4 NC_002169.1 + 18934 0.66 0.985155
Target:  5'- ---aACGAUCACGgcaGuGUCGUCGAAa- -3'
miRNA:   3'- aaacUGCUAGUGCg--C-CAGCAGCUUgu -5'
8526 5' -51.4 NC_002169.1 + 35059 0.67 0.979637
Target:  5'- gUUGACGGUgauagugcucaucugCACGUacaauugGGUCGUCGAguACGg -3'
miRNA:   3'- aAACUGCUA---------------GUGCG-------CCAGCAGCU--UGU- -5'
8526 5' -51.4 NC_002169.1 + 89412 0.67 0.978941
Target:  5'- -aUGACGGUaauaGCGGaCGUCGAAa- -3'
miRNA:   3'- aaACUGCUAgug-CGCCaGCAGCUUgu -5'
8526 5' -51.4 NC_002169.1 + 41543 0.67 0.970982
Target:  5'- --cGAUGcuGUCugGCGGUCcaGUCGAAg- -3'
miRNA:   3'- aaaCUGC--UAGugCGCCAG--CAGCUUgu -5'
8526 5' -51.4 NC_002169.1 + 43838 0.67 0.970982
Target:  5'- aUUUGAUgGGUCACGUacuugacguGGUUGUCGAAg- -3'
miRNA:   3'- -AAACUG-CUAGUGCG---------CCAGCAGCUUgu -5'
8526 5' -51.4 NC_002169.1 + 99436 0.67 0.970684
Target:  5'- cUUGACGGcuugccaggcaauUUGCGCGGcggucgCGUCGGACc -3'
miRNA:   3'- aAACUGCU-------------AGUGCGCCa-----GCAGCUUGu -5'
8526 5' -51.4 NC_002169.1 + 50399 0.68 0.9646
Target:  5'- cUUGGCGAUCuCGCGGUCcaaaugcuuuagGUCcGACu -3'
miRNA:   3'- aAACUGCUAGuGCGCCAG------------CAGcUUGu -5'
8526 5' -51.4 NC_002169.1 + 79782 0.68 0.964257
Target:  5'- --cGGCGAUCAUcuggccaGCGGcagCGUCGAAgAg -3'
miRNA:   3'- aaaCUGCUAGUG-------CGCCa--GCAGCUUgU- -5'
8526 5' -51.4 NC_002169.1 + 78179 0.68 0.961065
Target:  5'- gUUUGACGAUCGCGuCGaGaCGuuuaauuucaUCGAGCAg -3'
miRNA:   3'- -AAACUGCUAGUGC-GC-CaGC----------AGCUUGU- -5'
8526 5' -51.4 NC_002169.1 + 32014 0.68 0.961065
Target:  5'- cUUGACGuguucgcguuUCAuCGCGGUCaauggauaGUCGAGCGu -3'
miRNA:   3'- aAACUGCu---------AGU-GCGCCAG--------CAGCUUGU- -5'
8526 5' -51.4 NC_002169.1 + 107237 0.68 0.957293
Target:  5'- --cGAcCGGgauGCGCGGUCGUUGAAUu -3'
miRNA:   3'- aaaCU-GCUag-UGCGCCAGCAGCUUGu -5'
8526 5' -51.4 NC_002169.1 + 131516 0.68 0.957293
Target:  5'- aUUUGACGAUCGauucuuUGuGUCGUCGAAUg -3'
miRNA:   3'- -AAACUGCUAGUgc----GC-CAGCAGCUUGu -5'
8526 5' -51.4 NC_002169.1 + 108112 0.69 0.944508
Target:  5'- --cGACGuucuuacuuuuGUUGCGCGGUCGauucguUCGAGCGa -3'
miRNA:   3'- aaaCUGC-----------UAGUGCGCCAGC------AGCUUGU- -5'
8526 5' -51.4 NC_002169.1 + 110170 0.69 0.929447
Target:  5'- gUUGgacACGAUCACGcCGGccgCGUgGAGCAc -3'
miRNA:   3'- aAAC---UGCUAGUGC-GCCa--GCAgCUUGU- -5'
8526 5' -51.4 NC_002169.1 + 43060 0.71 0.862746
Target:  5'- gUUGACGGUgAUGCGuuuGUCGUCGGcguACAc -3'
miRNA:   3'- aAACUGCUAgUGCGC---CAGCAGCU---UGU- -5'
8526 5' -51.4 NC_002169.1 + 15691 0.72 0.838135
Target:  5'- --gGACGAcCGCGaCGGUuaCGUCGAGCu -3'
miRNA:   3'- aaaCUGCUaGUGC-GCCA--GCAGCUUGu -5'
8526 5' -51.4 NC_002169.1 + 12913 0.72 0.829517
Target:  5'- cUUGACGuUgGCGCaGUCGUCGAAg- -3'
miRNA:   3'- aAACUGCuAgUGCGcCAGCAGCUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.