miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 9738 0.7 0.493013
Target:  5'- -cGUCGaCGUCGUCGUCGUCuccauuGUUGUCu -3'
miRNA:   3'- aaCAGCgGCAGCGGCGGCAG------CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 11898 0.84 0.058617
Target:  5'- --uUCGUCGUCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 12227 0.77 0.17242
Target:  5'- -gGUUGCUGUUuugGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 14330 0.71 0.421015
Target:  5'- ---aUGCCGgcgaauaUGUCGCCGUUGUCGUCg -3'
miRNA:   3'- aacaGCGGCa------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 15163 0.85 0.05709
Target:  5'- uUUGcCGCCGccacCGCCGCCGUCGUUGUCg -3'
miRNA:   3'- -AACaGCGGCa---GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 15825 0.68 0.599919
Target:  5'- -cGUCGUCGUgacCGCCGCCGaCGcugccgcaaugCGUCa -3'
miRNA:   3'- aaCAGCGGCA---GCGGCGGCaGCa----------GCAG- -5'
8530 5' -60.2 NC_002169.1 + 16184 0.67 0.649886
Target:  5'- aUUGUUGuuGUUGuuGuuGUUGUUGUUg -3'
miRNA:   3'- -AACAGCggCAGCggCggCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 17244 0.78 0.156121
Target:  5'- -cGUCGacggCGUUGUCGUCGUCGUCGUCu -3'
miRNA:   3'- aaCAGCg---GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 17741 0.78 0.164089
Target:  5'- uUUG-CGUucuuCGUCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACaGCG----GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 19605 0.68 0.589966
Target:  5'- -gGUCGuuGUCGUugCGCCGgucCGUCGa- -3'
miRNA:   3'- aaCAGCggCAGCG--GCGGCa--GCAGCag -5'
8530 5' -60.2 NC_002169.1 + 24875 0.88 0.031803
Target:  5'- -cGUCGUCGUCGUCGUCGUCGUCGUUa -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 25515 0.77 0.181127
Target:  5'- cUGUCGUCGUCGUCGUCGUuacCGUUGUUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCA---GCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 26367 0.68 0.599919
Target:  5'- aUUGUaaaaGCCuUCGCCGgCGaCGUCGUUg -3'
miRNA:   3'- -AACAg---CGGcAGCGGCgGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 32560 0.79 0.137715
Target:  5'- gUUGUUGUCGUuggcuagcacCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCA----------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 33280 0.94 0.01309
Target:  5'- gUUGUCGUCGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 33338 0.8 0.124447
Target:  5'- -cGUCGUUaUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGcAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 34435 0.69 0.502417
Target:  5'- aUGUUGuuGUUGuuGUCGUCGUUGg- -3'
miRNA:   3'- aACAGCggCAGCggCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 37406 0.67 0.673807
Target:  5'- -cGUCgGCCGaUCGCUGuacacuccgaacagaCCGUCGUCGa- -3'
miRNA:   3'- aaCAG-CGGC-AGCGGC---------------GGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 39375 0.69 0.511898
Target:  5'- --aUUGCCGaUCGgcaCCGCCGUCGUCaUCg -3'
miRNA:   3'- aacAGCGGC-AGC---GGCGGCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 39913 0.73 0.325874
Target:  5'- gUUGUCGUuccauaauagUGUCGCCGCCGUUGcCGcCg -3'
miRNA:   3'- -AACAGCG----------GCAGCGGCGGCAGCaGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.