miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 1137 0.67 0.649886
Target:  5'- cUGcCGCCGUCGCCGgUCGUuuagcuugaUGUUGUa -3'
miRNA:   3'- aACaGCGGCAGCGGC-GGCA---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 1222 0.75 0.24765
Target:  5'- -cGUCGCCGUCGaa-CCGUCGUCGa- -3'
miRNA:   3'- aaCAGCGGCAGCggcGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 1452 0.82 0.091445
Target:  5'- ---cCGCCGUCGCUGCCacuuucGUCGUCGUCg -3'
miRNA:   3'- aacaGCGGCAGCGGCGG------CAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1487 0.81 0.101401
Target:  5'- -cGcCGCCGcCGCCGCCGUCaUCGUCu -3'
miRNA:   3'- aaCaGCGGCaGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1838 0.8 0.118266
Target:  5'- cUGgCGCCGUCGCCaCCGaCGUCGUCg -3'
miRNA:   3'- aACaGCGGCAGCGGcGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1939 0.73 0.304725
Target:  5'- uUUGUUGCUuaUCGCCGCCGauggugUCGUUGUCa -3'
miRNA:   3'- -AACAGCGGc-AGCGGCGGC------AGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 2396 0.78 0.164089
Target:  5'- --uUCGCUGuacUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aacAGCGGC---AGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3215 0.73 0.325874
Target:  5'- --uUCGUCGUCGUCGUCGUCaUUGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3359 0.84 0.058617
Target:  5'- aUUGUCGUCGUCGUCGUCGUCcUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3551 0.69 0.531076
Target:  5'- --uUCGUCGUCGuuGUCGUCccuGUCGUUu -3'
miRNA:   3'- aacAGCGGCAGCggCGGCAG---CAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3857 0.81 0.096301
Target:  5'- aUUGUCGUuaauuuguauaaUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCG------------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4276 1.07 0.001455
Target:  5'- gUUGUCGCCGUCGCCGCCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4345 0.67 0.658871
Target:  5'- --uUCGCCucCGCCGCCGUCaccaccgcaaccgGUCGUa -3'
miRNA:   3'- aacAGCGGcaGCGGCGGCAG-------------CAGCAg -5'
8530 5' -60.2 NC_002169.1 + 4411 0.81 0.096301
Target:  5'- gUUGUCGuuGUCauuGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4524 0.82 0.086822
Target:  5'- -cGUCGUuauuagCGUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aaCAGCG------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 5555 0.69 0.511898
Target:  5'- --aUUGuuGUUGCUGCCGUCGcCGUa -3'
miRNA:   3'- aacAGCggCAGCGGCGGCAGCaGCAg -5'
8530 5' -60.2 NC_002169.1 + 6225 0.77 0.181127
Target:  5'- -aGUCGCCGcCGCCGCCGcCGcCGcCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 6829 0.81 0.104045
Target:  5'- -cGUUGUCGUCGUCGUCGUCGUCGg- -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 7024 0.7 0.45625
Target:  5'- gUUGUCGUCGUCGCauugGCUG-CGgCGUCa -3'
miRNA:   3'- -AACAGCGGCAGCGg---CGGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 9237 0.68 0.61389
Target:  5'- aUUGUCGUCGUCGUCGUUgugacuuguuuguugGUCGaCGUUg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGG---------------CAGCaGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.