miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 107163 0.75 0.241886
Target:  5'- --cUCGUCGaUGCCGCCGUUGUCGUa -3'
miRNA:   3'- aacAGCGGCaGCGGCGGCAGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 32560 0.79 0.137715
Target:  5'- gUUGUUGUCGUuggcuagcacCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCA----------GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 17741 0.78 0.164089
Target:  5'- uUUG-CGUucuuCGUCGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -AACaGCG----GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 100274 0.78 0.168208
Target:  5'- -cGcCGCCGUCGCCGCCGcagacuaugcauUCGUUGUa -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGC------------AGCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 12227 0.77 0.17242
Target:  5'- -gGUUGCUGUUuugGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 6225 0.77 0.181127
Target:  5'- -aGUCGCCGcCGCCGCCGcCGcCGcCg -3'
miRNA:   3'- aaCAGCGGCaGCGGCGGCaGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 25515 0.77 0.181127
Target:  5'- cUGUCGUCGUCGUCGUCGUuacCGUUGUUa -3'
miRNA:   3'- aACAGCGGCAGCGGCGGCA---GCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 127528 0.76 0.199713
Target:  5'- --uUCGUCGUCGCuagauccgcuuuCGUCGUCGUCGUCg -3'
miRNA:   3'- aacAGCGGCAGCG------------GCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 41291 0.75 0.241886
Target:  5'- --uUUGUCGUUGCCGUCGaCGUCGUCa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3857 0.81 0.096301
Target:  5'- aUUGUCGUuaauuuguauaaUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCG------------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4411 0.81 0.096301
Target:  5'- gUUGUCGuuGUCauuGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAG---CGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 86324 0.82 0.091445
Target:  5'- aUGUCGUuauugguauUGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aACAGCG---------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 86751 0.88 0.032665
Target:  5'- -aGUCGUCGUCGUCGUCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 15163 0.85 0.05709
Target:  5'- uUUGcCGCCGccacCGCCGCCGUCGUUGUCg -3'
miRNA:   3'- -AACaGCGGCa---GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 11898 0.84 0.058617
Target:  5'- --uUCGUCGUCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3359 0.84 0.058617
Target:  5'- aUUGUCGUCGUCGUCGUCGUCcUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 101359 0.84 0.065127
Target:  5'- aUUGUUGuuGUUGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 74738 0.83 0.068639
Target:  5'- -cGUCGUCGUCuCCGCCGUCGUCGcCa -3'
miRNA:   3'- aaCAGCGGCAGcGGCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 118662 0.83 0.078234
Target:  5'- -cGUCGUCGUCGUCGUCGUCGuaUCGUCu -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGC--AGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4524 0.82 0.086822
Target:  5'- -cGUCGUuauuagCGUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aaCAGCG------GCAGCGGCGGCAGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.