miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 4276 1.07 0.001455
Target:  5'- gUUGUCGCCGUCGCCGCCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 33280 0.94 0.01309
Target:  5'- gUUGUCGUCGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 65448 0.89 0.027081
Target:  5'- -cGcCGCCGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCaGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 108900 0.88 0.031803
Target:  5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 109389 0.88 0.031803
Target:  5'- -cGUCGUCGUUGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 24875 0.88 0.031803
Target:  5'- -cGUCGUCGUCGUCGUCGUCGUCGUUa -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 86751 0.88 0.032665
Target:  5'- -aGUCGUCGUCGUCGUCGUCGUCGUUg -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 78907 0.85 0.05136
Target:  5'- --aUCGUCGUCGUCGUCGUCGUCGUCu -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 55494 0.85 0.052738
Target:  5'- aUGcCGCCGcCGCUGUCGUCGUCGUCa -3'
miRNA:   3'- aACaGCGGCaGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 15163 0.85 0.05709
Target:  5'- uUUGcCGCCGccacCGCCGCCGUCGUUGUCg -3'
miRNA:   3'- -AACaGCGGCa---GCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 11898 0.84 0.058617
Target:  5'- --uUCGUCGUCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 3359 0.84 0.058617
Target:  5'- aUUGUCGUCGUCGUCGUCGUCcUCGUCg -3'
miRNA:   3'- -AACAGCGGCAGCGGCGGCAGcAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 61587 0.84 0.063437
Target:  5'- -cGUCGUaauCGUCGUCGUCGUCGUCGUCg -3'
miRNA:   3'- aaCAGCG---GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 101359 0.84 0.065127
Target:  5'- aUUGUUGuuGUUGUCGUCGUCGUCGUCa -3'
miRNA:   3'- -AACAGCggCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 120977 0.84 0.066861
Target:  5'- --aUCGUCGUCGCCGUCGUCGUUGUUg -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 74738 0.83 0.068639
Target:  5'- -cGUCGUCGUCuCCGCCGUCGUCGcCa -3'
miRNA:   3'- aaCAGCGGCAGcGGCGGCAGCAGCaG- -5'
8530 5' -60.2 NC_002169.1 + 124046 0.83 0.078234
Target:  5'- --aUCGUCGUCGUCGUCGUCGUCGUUa -3'
miRNA:   3'- aacAGCGGCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 118662 0.83 0.078234
Target:  5'- -cGUCGUCGUCGUCGUCGUCGuaUCGUCu -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGCAGC--AGCAG- -5'
8530 5' -60.2 NC_002169.1 + 117729 0.82 0.080302
Target:  5'- -cGUCGUCGUCGCCGCCGccuucUUGUCGUUu -3'
miRNA:   3'- aaCAGCGGCAGCGGCGGC-----AGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 4524 0.82 0.086822
Target:  5'- -cGUCGUuauuagCGUCGUCGUCGUCGUCGUCa -3'
miRNA:   3'- aaCAGCG------GCAGCGGCGGCAGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.