miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 3' -44.8 NC_002169.1 + 10707 1.11 0.024541
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11034 1.11 0.024541
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 42065 1.06 0.050302
Target:  5'- aUUUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11568 1 0.101659
Target:  5'- cUCUAGUACUCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11232 0.98 0.131525
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 71831 0.97 0.164667
Target:  5'- uUCUAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 52859 0.97 0.164667
Target:  5'- uUCUAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105400 0.95 0.205125
Target:  5'- cUUUAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119418 0.93 0.253913
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 120037 0.93 0.253913
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11477 0.93 0.260642
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 10904 0.93 0.260642
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 10935 0.92 0.281698
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119796 0.92 0.281698
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105289 0.92 0.296472
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAg -5'
8535 3' -44.8 NC_002169.1 + 10815 0.91 0.304081
Target:  5'- cUCUAGUACaCGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11442 0.91 0.327806
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 42192 0.91 0.327807
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 41772 0.9 0.352874
Target:  5'- ----aUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119602 0.9 0.370324
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.