Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8535 | 3' | -44.8 | NC_002169.1 | + | 10707 | 1.11 | 0.024541 |
Target: 5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 10815 | 0.91 | 0.304081 |
Target: 5'- cUCUAGUACaCGAUgUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGaGCUAgAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 10904 | 0.93 | 0.260642 |
Target: 5'- uUUUAGUACaUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 10935 | 0.92 | 0.281698 |
Target: 5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11012 | 0.8 | 0.819821 |
Target: 5'- gUUUAGUACaUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11034 | 1.11 | 0.024541 |
Target: 5'- cUCUAGUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11132 | 0.79 | 0.847071 |
Target: 5'- gUUUAaUACaUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11173 | 0.8 | 0.838209 |
Target: 5'- ----aUGCaCGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11232 | 0.98 | 0.131525 |
Target: 5'- cUCUAGUACaUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11366 | 0.77 | 0.915415 |
Target: 5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11442 | 0.91 | 0.327806 |
Target: 5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11477 | 0.93 | 0.260642 |
Target: 5'- -aUAGUACaCGAUCUUUGCUUUCGUCg -3' miRNA: 3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11568 | 1 | 0.101659 |
Target: 5'- cUCUAGUACUCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11638 | 0.77 | 0.933219 |
Target: 5'- uUCUAGUACaUGAUgUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 11761 | 0.78 | 0.908909 |
Target: 5'- ----aUACaCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 32793 | 0.66 | 0.999992 |
Target: 5'- aCUAGUACgcugacCGAUUUgcGUcgUUUCGUCg -3' miRNA: 3'- aGAUCAUGa-----GCUAGAaaCG--AAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 41772 | 0.9 | 0.352874 |
Target: 5'- ----aUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGAGCUAGAAACGAAAGCAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 41873 | 0.67 | 0.999968 |
Target: 5'- ----aUACaCGAUCUUUGCUUUCaUCg -3' miRNA: 3'- agaucAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 41999 | 0.76 | 0.95297 |
Target: 5'- --cAGUACaCGAUCUUUGCUUUCaUCu -3' miRNA: 3'- agaUCAUGaGCUAGAAACGAAAGcAG- -5' |
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8535 | 3' | -44.8 | NC_002169.1 | + | 42065 | 1.06 | 0.050302 |
Target: 5'- aUUUAGUACUCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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