miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 3' -44.8 NC_002169.1 + 122762 0.66 0.999996
Target:  5'- aCUAGUGCUCa---UUUGUUcggcgUCGUCg -3'
miRNA:   3'- aGAUCAUGAGcuagAAACGAa----AGCAG- -5'
8535 3' -44.8 NC_002169.1 + 120230 0.8 0.838209
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 120037 0.93 0.253913
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119796 0.92 0.281698
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119616 0.8 0.819821
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 119602 0.9 0.370324
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119518 0.79 0.880098
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 119418 0.93 0.253913
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119325 0.76 0.957213
Target:  5'- ----aUAgaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 108376 0.66 0.999994
Target:  5'- aCU-GUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- aGAuCAUGaGCUAGaaACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105690 0.66 0.999996
Target:  5'- ----aUACaCGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 105600 0.66 0.999983
Target:  5'- ----aUACaCaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGcUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105501 0.88 0.455795
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105407 0.67 0.999976
Target:  5'- cUUUAaUACaCGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 105400 0.95 0.205125
Target:  5'- cUUUAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105289 0.92 0.296472
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAg -5'
8535 3' -44.8 NC_002169.1 + 105202 0.75 0.968351
Target:  5'- uUUUAaUACaCGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105091 0.82 0.717424
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 105026 0.9 0.370324
Target:  5'- ----cUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 104956 0.85 0.561795
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.