miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 5' -44.4 NC_002169.1 + 53060 0.89 0.422033
Target:  5'- -gGAUGAAAGCAAAGAUgAUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAgUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53076 0.96 0.18027
Target:  5'- -gGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53156 1.01 0.093364
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53204 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53284 1.09 0.034914
Target:  5'- gUCGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53494 0.68 0.999837
Target:  5'- aUCGACGggGGUguGGAGAUCGUa----- -3'
miRNA:   3'- -AGCUGCuuUCG--UUUCUAGUAcaugau -5'
8535 5' -44.4 NC_002169.1 + 71670 1.02 0.085501
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 71797 1.04 0.069538
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 80180 0.76 0.948886
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- -AGCUGCU------------UUCGUuuCUAGUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 99937 0.66 0.999993
Target:  5'- aUUGACGcGAGGCGGcgcAGGUCGUgGUAUUGa -3'
miRNA:   3'- -AGCUGC-UUUCGUU---UCUAGUA-CAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 104799 0.72 0.993362
Target:  5'- -gGACGAAAGCAAAGAUUg---ACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGuacaUGAU- -5'
8535 5' -44.4 NC_002169.1 + 104869 0.81 0.769215
Target:  5'- -gGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUaCA--UGAU- -5'
8535 5' -44.4 NC_002169.1 + 104927 1.04 0.069538
Target:  5'- gUCGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 104987 1 0.10801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 104997 1.05 0.054801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105115 1.01 0.093364
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105125 0.96 0.185341
Target:  5'- cUCuACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGcUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105236 1.09 0.035984
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105255 1.04 0.061745
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105355 0.68 0.999948
Target:  5'- -gGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAgUACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.