miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 5' -44.4 NC_002169.1 + 24549 0.69 0.999553
Target:  5'- cUCGACGuAAGCGAAGAUgaUAUGUugaACa- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUA--GUACA---UGau -5'
8535 5' -44.4 NC_002169.1 + 26639 0.72 0.994324
Target:  5'- cUCGGCGAGGGCAaAAGG--GUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGU-UUCUagUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 32962 0.72 0.996556
Target:  5'- uUCGACGAAAcgacGCAAAucGGUCAgcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUU--CUAGUa-CAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 36267 0.67 0.999972
Target:  5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3'
miRNA:   3'- -AGCUGCuuu----CGUUUCUagUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 37283 0.72 0.996556
Target:  5'- aUCGACG-GAGCAGGGAUCgAUG-ACg- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAG-UACaUGau -5'
8535 5' -44.4 NC_002169.1 + 41904 0.74 0.982473
Target:  5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGUaCAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 41928 0.82 0.75874
Target:  5'- -gGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUaCAUGau -5'
8535 5' -44.4 NC_002169.1 + 42031 0.95 0.201317
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 42032 1.01 0.101909
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 42158 0.97 0.165787
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 42222 0.78 0.902249
Target:  5'- -gGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAugau -5'
8535 5' -44.4 NC_002169.1 + 42291 0.81 0.809506
Target:  5'- -gGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACA---UGAu -5'
8535 5' -44.4 NC_002169.1 + 42350 1.04 0.061745
Target:  5'- cUCGAUGAAAGCAAAGAUCAUGUACUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 42419 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 43984 0.67 0.999962
Target:  5'- gUCGuCGAAAGUAAAGA-CGUGcACg- -3'
miRNA:   3'- -AGCuGCUUUCGUUUCUaGUACaUGau -5'
8535 5' -44.4 NC_002169.1 + 52698 1.02 0.085501
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 52815 0.97 0.170495
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 52825 0.9 0.348648
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 52932 0.79 0.887709
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUaCAUGau -5'
8535 5' -44.4 NC_002169.1 + 52942 0.94 0.236869
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.