Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8535 | 5' | -44.4 | NC_002169.1 | + | 1863 | 0.66 | 0.99999 |
Target: 5'- cCGGCGgcGGCAAAGAUUAUc-GCUc -3' miRNA: 3'- aGCUGCuuUCGUUUCUAGUAcaUGAu -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 4197 | 0.67 | 0.999986 |
Target: 5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3' miRNA: 3'- aGCUGCUUUCGUUUCU---------AgUACAUgau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10551 | 0.77 | 0.927893 |
Target: 5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10679 | 0.83 | 0.693449 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGU-ACAUgau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10741 | 1.09 | 0.031888 |
Target: 5'- uUCGACGAAAGCAAAGAUCAUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10849 | 1.05 | 0.054801 |
Target: 5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10868 | 0.8 | 0.828519 |
Target: 5'- -gGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCuUUCGUUUCUAGUaCAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10969 | 0.88 | 0.441781 |
Target: 5'- uUCGACGAAA-CAAAGAUCAUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUcGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 10978 | 0.94 | 0.224467 |
Target: 5'- cUCGACGAAAGCAAAcAUCGUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11068 | 1.09 | 0.031888 |
Target: 5'- uUCGACGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11096 | 0.94 | 0.236869 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGau -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11196 | 0.91 | 0.340138 |
Target: 5'- -gGACGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUaCAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11204 | 0.97 | 0.165787 |
Target: 5'- -gGACGAAAGCAAAGAUCAUGUAUUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11315 | 1.08 | 0.038222 |
Target: 5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11332 | 0.89 | 0.41236 |
Target: 5'- gUCGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACau---GAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11445 | 0.93 | 0.263391 |
Target: 5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11474 | 0.91 | 0.315522 |
Target: 5'- gUCGAUGAAAGCAAAcAUCAUGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUcUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11602 | 1.01 | 0.101909 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11604 | 0.95 | 0.195863 |
Target: 5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' |
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8535 | 5' | -44.4 | NC_002169.1 | + | 11732 | 0.94 | 0.230598 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- -AGCUGCUUUCGUUUCUAGUaCAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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