miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 5' -44.4 NC_002169.1 + 119354 0.92 0.292275
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGcUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105532 0.99 0.132157
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11204 0.97 0.165787
Target:  5'- -gGACGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 52815 0.97 0.170495
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAgUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53076 0.96 0.18027
Target:  5'- -gGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105125 0.96 0.185341
Target:  5'- cUCuACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGcUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11604 0.95 0.195863
Target:  5'- -gGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 119635 0.94 0.236869
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 105441 0.93 0.256542
Target:  5'- uUCGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 104987 1 0.10801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGau -5'
8535 5' -44.4 NC_002169.1 + 42032 1.01 0.101909
Target:  5'- -gGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 53156 1.01 0.093364
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11068 1.09 0.031888
Target:  5'- uUCGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 105236 1.09 0.035984
Target:  5'- gUCGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 11315 1.08 0.038222
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 10849 1.05 0.054801
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 119452 1.05 0.054801
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 120071 1.03 0.078272
Target:  5'- uUCGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 52698 1.02 0.085501
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5'
8535 5' -44.4 NC_002169.1 + 71670 1.02 0.085501
Target:  5'- -gGACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.